Coexpression cluster: Cluster_179 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043604 amide biosynthetic process 18.84% (13/69) 4.3 0.0 0.0
GO:0043043 peptide biosynthetic process 18.84% (13/69) 4.32 0.0 0.0
GO:0003735 structural constituent of ribosome 18.84% (13/69) 4.33 0.0 0.0
GO:0006518 peptide metabolic process 18.84% (13/69) 4.21 0.0 0.0
GO:0043603 amide metabolic process 18.84% (13/69) 4.17 0.0 0.0
GO:0005198 structural molecule activity 18.84% (13/69) 4.13 0.0 0.0
GO:0006412 translation 18.84% (13/69) 4.34 0.0 0.0
GO:0005840 ribosome 17.39% (12/69) 4.27 0.0 0.0
GO:0009059 macromolecule biosynthetic process 20.29% (14/69) 3.72 0.0 0.0
GO:0043228 non-membrane-bounded organelle 17.39% (12/69) 4.04 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 17.39% (12/69) 4.04 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 18.84% (13/69) 3.62 0.0 0.0
GO:0043226 organelle 18.84% (13/69) 3.42 0.0 0.0
GO:0043229 intracellular organelle 18.84% (13/69) 3.42 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 18.84% (13/69) 3.41 0.0 0.0
GO:0044249 cellular biosynthetic process 20.29% (14/69) 3.05 0.0 0.0
GO:1901576 organic substance biosynthetic process 20.29% (14/69) 2.91 0.0 0.0
GO:0003676 nucleic acid binding 26.09% (18/69) 2.35 0.0 0.0
GO:0009058 biosynthetic process 20.29% (14/69) 2.75 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 20.29% (14/69) 2.72 0.0 0.0
GO:0045182 translation regulator activity 7.25% (5/69) 5.14 0.0 2e-06
GO:0008135 translation factor activity, RNA binding 7.25% (5/69) 5.14 0.0 2e-06
GO:0090079 translation regulator activity, nucleic acid binding 7.25% (5/69) 5.14 0.0 2e-06
GO:0003743 translation initiation factor activity 5.8% (4/69) 5.47 2e-06 1e-05
GO:1901363 heterocyclic compound binding 34.78% (24/69) 1.34 9e-06 4e-05
GO:0097159 organic cyclic compound binding 34.78% (24/69) 1.34 9e-06 4e-05
GO:0005575 cellular_component 24.64% (17/69) 1.64 1.9e-05 8.3e-05
GO:0003723 RNA binding 11.59% (8/69) 2.76 2.3e-05 9.8e-05
GO:0044237 cellular metabolic process 26.09% (18/69) 1.54 2.6e-05 0.000106
GO:0110165 cellular anatomical entity 21.74% (15/69) 1.74 3.1e-05 0.000121
GO:0030684 preribosome 2.9% (2/69) 6.97 0.000111 0.000421
GO:0009987 cellular process 30.43% (21/69) 1.13 0.000311 0.001147
GO:0043170 macromolecule metabolic process 21.74% (15/69) 1.28 0.000993 0.00355
GO:0019538 protein metabolic process 18.84% (13/69) 1.38 0.001187 0.004118
GO:0140662 ATP-dependent protein folding chaperone 4.35% (3/69) 3.84 0.001231 0.004151
GO:0044183 protein folding chaperone 4.35% (3/69) 3.78 0.001387 0.004546
GO:0006413 translational initiation 2.9% (2/69) 5.14 0.001485 0.004737
GO:0035639 purine ribonucleoside triphosphate binding 15.94% (11/69) 1.46 0.001973 0.006125
GO:1990904 ribonucleoprotein complex 2.9% (2/69) 4.85 0.002201 0.00666
GO:0005488 binding 37.68% (26/69) 0.75 0.002934 0.008656
GO:0008152 metabolic process 26.09% (18/69) 0.98 0.003136 0.009025
GO:0003674 molecular_function 53.62% (37/69) 0.54 0.003257 0.009151
GO:0030688 preribosome, small subunit precursor 1.45% (1/69) 8.14 0.003544 0.009724
GO:1901564 organonitrogen compound metabolic process 18.84% (13/69) 1.18 0.004229 0.01134
GO:0032555 purine ribonucleotide binding 15.94% (11/69) 1.24 0.006224 0.015966
GO:0006807 nitrogen compound metabolic process 20.29% (14/69) 1.06 0.006122 0.016054
GO:0032553 ribonucleotide binding 15.94% (11/69) 1.23 0.006525 0.016382
GO:0097367 carbohydrate derivative binding 15.94% (11/69) 1.23 0.006708 0.01649
GO:0005524 ATP binding 13.04% (9/69) 1.35 0.008469 0.020394
GO:0008097 5S rRNA binding 1.45% (1/69) 6.82 0.008836 0.020852
GO:0017076 purine nucleotide binding 15.94% (11/69) 1.16 0.009206 0.021301
GO:0000166 nucleotide binding 15.94% (11/69) 1.1 0.012559 0.027444
GO:1901265 nucleoside phosphate binding 15.94% (11/69) 1.1 0.012559 0.027444
GO:0043168 anion binding 15.94% (11/69) 1.09 0.012925 0.02773
GO:0032040 small-subunit processome 1.45% (1/69) 6.33 0.012348 0.028021
GO:0036094 small molecule binding 15.94% (11/69) 1.05 0.015862 0.033424
GO:0071704 organic substance metabolic process 21.74% (15/69) 0.83 0.018408 0.038109
GO:0032559 adenyl ribonucleotide binding 13.04% (9/69) 1.1 0.023287 0.047378
GO:0005852 eukaryotic translation initiation factor 3 complex 1.45% (1/69) 5.33 0.024546 0.049093
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.028 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_109 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_216 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_245 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_249 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.063 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_38 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_158 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_161 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_175 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.025 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_246 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_253 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_273 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_324 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (69) (download table)

InterPro Domains

GO Terms

Family Terms