Coexpression cluster: Cluster_235 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 37.74% (20/53) 4.45 0.0 0.0
GO:0043043 peptide biosynthetic process 33.96% (18/53) 4.89 0.0 0.0
GO:0043604 amide biosynthetic process 33.96% (18/53) 4.86 0.0 0.0
GO:0006518 peptide metabolic process 33.96% (18/53) 4.82 0.0 0.0
GO:0003735 structural constituent of ribosome 33.96% (18/53) 4.9 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 45.28% (24/53) 3.76 0.0 0.0
GO:0006412 translation 33.96% (18/53) 4.92 0.0 0.0
GO:0043603 amide metabolic process 33.96% (18/53) 4.78 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 33.96% (18/53) 4.77 0.0 0.0
GO:0043228 non-membrane-bounded organelle 33.96% (18/53) 4.77 0.0 0.0
GO:0005840 ribosome 33.96% (18/53) 4.95 0.0 0.0
GO:0005198 structural molecule activity 33.96% (18/53) 4.74 0.0 0.0
GO:0044249 cellular biosynthetic process 39.62% (21/53) 3.89 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 35.85% (19/53) 4.17 0.0 0.0
GO:0009059 macromolecule biosynthetic process 33.96% (18/53) 4.29 0.0 0.0
GO:1901576 organic substance biosynthetic process 39.62% (21/53) 3.73 0.0 0.0
GO:0009058 biosynthetic process 39.62% (21/53) 3.55 0.0 0.0
GO:0043226 organelle 33.96% (18/53) 3.95 0.0 0.0
GO:0043229 intracellular organelle 33.96% (18/53) 3.95 0.0 0.0
GO:0044237 cellular metabolic process 49.06% (26/53) 2.43 0.0 0.0
GO:0006807 nitrogen compound metabolic process 47.17% (25/53) 2.26 0.0 0.0
GO:0043170 macromolecule metabolic process 43.4% (23/53) 2.26 0.0 0.0
GO:0044238 primary metabolic process 49.06% (26/53) 2.01 0.0 0.0
GO:0071704 organic substance metabolic process 49.06% (26/53) 1.95 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 39.62% (21/53) 2.25 0.0 0.0
GO:0008152 metabolic process 49.06% (26/53) 1.83 0.0 0.0
GO:0009987 cellular process 49.06% (26/53) 1.74 0.0 0.0
GO:0110165 cellular anatomical entity 35.85% (19/53) 2.21 0.0 0.0
GO:0019538 protein metabolic process 33.96% (18/53) 2.24 0.0 0.0
GO:0005575 cellular_component 35.85% (19/53) 1.95 0.0 1e-06
GO:0003674 molecular_function 67.92% (36/53) 0.73 6.7e-05 0.000325
GO:0008150 biological_process 49.06% (26/53) 1.03 6.6e-05 0.000326
GO:0032561 guanyl ribonucleotide binding 9.43% (5/53) 3.44 9.8e-05 0.000442
GO:0005525 GTP binding 9.43% (5/53) 3.44 9.8e-05 0.000442
GO:0019001 guanyl nucleotide binding 9.43% (5/53) 3.41 0.000108 0.000477
GO:0042254 ribosome biogenesis 3.77% (2/53) 6.5 0.000221 0.000946
GO:0022613 ribonucleoprotein complex biogenesis 3.77% (2/53) 6.42 0.000249 0.001035
GO:0003924 GTPase activity 7.55% (4/53) 3.53 0.000404 0.001638
GO:0001522 pseudouridine synthesis 3.77% (2/53) 5.89 0.000525 0.002072
GO:0016070 RNA metabolic process 9.43% (5/53) 2.88 0.00058 0.002234
GO:0006139 nucleobase-containing compound metabolic process 11.32% (6/53) 2.51 0.000624 0.002342
GO:0044085 cellular component biogenesis 3.77% (2/53) 5.42 0.001009 0.003699
GO:0006725 cellular aromatic compound metabolic process 11.32% (6/53) 2.36 0.001068 0.003738
GO:0046483 heterocycle metabolic process 11.32% (6/53) 2.36 0.001062 0.003804
GO:1901360 organic cyclic compound metabolic process 11.32% (6/53) 2.33 0.001182 0.004045
GO:0016874 ligase activity 5.66% (3/53) 3.73 0.001516 0.005075
GO:0090304 nucleic acid metabolic process 9.43% (5/53) 2.52 0.001765 0.005784
GO:0009451 RNA modification 3.77% (2/53) 4.71 0.002688 0.008624
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.55% (4/53) 2.75 0.002969 0.00933
GO:0003723 RNA binding 9.43% (5/53) 2.3 0.003392 0.010449
GO:0016462 pyrophosphatase activity 7.55% (4/53) 2.68 0.003508 0.010594
GO:0016817 hydrolase activity, acting on acid anhydrides 7.55% (4/53) 2.64 0.003884 0.010682
GO:0004814 arginine-tRNA ligase activity 1.89% (1/53) 8.01 0.003882 0.01087
GO:0006420 arginyl-tRNA aminoacylation 1.89% (1/53) 8.01 0.003882 0.01087
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.89% (1/53) 8.01 0.003882 0.01087
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.55% (4/53) 2.65 0.003802 0.011258
GO:0051536 iron-sulfur cluster binding 3.77% (2/53) 4.29 0.004761 0.012642
GO:0051540 metal cluster binding 3.77% (2/53) 4.29 0.004761 0.012642
GO:0016885 ligase activity, forming carbon-carbon bonds 1.89% (1/53) 7.59 0.005173 0.013059
GO:0003989 acetyl-CoA carboxylase activity 1.89% (1/53) 7.59 0.005173 0.013059
GO:0016421 CoA carboxylase activity 1.89% (1/53) 7.59 0.005173 0.013059
GO:0044281 small molecule metabolic process 7.55% (4/53) 2.44 0.006294 0.015634
GO:0030515 snoRNA binding 1.89% (1/53) 7.27 0.006462 0.015796
GO:0009089 lysine biosynthetic process via diaminopimelate 1.89% (1/53) 7.01 0.007749 0.017812
GO:0046451 diaminopimelate metabolic process 1.89% (1/53) 7.01 0.007749 0.017812
GO:0006553 lysine metabolic process 1.89% (1/53) 7.01 0.007749 0.017812
GO:0009085 lysine biosynthetic process 1.89% (1/53) 7.01 0.007749 0.017812
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 1.89% (1/53) 6.78 0.009035 0.020462
GO:0003883 CTP synthase activity 1.89% (1/53) 6.42 0.011602 0.025165
GO:0006220 pyrimidine nucleotide metabolic process 1.89% (1/53) 6.42 0.011602 0.025165
GO:0006221 pyrimidine nucleotide biosynthetic process 1.89% (1/53) 6.42 0.011602 0.025165
GO:0006082 organic acid metabolic process 5.66% (3/53) 2.64 0.012405 0.025815
GO:0043436 oxoacid metabolic process 5.66% (3/53) 2.65 0.012316 0.025981
GO:0019752 carboxylic acid metabolic process 5.66% (3/53) 2.65 0.012316 0.025981
GO:0016053 organic acid biosynthetic process 3.77% (2/53) 3.49 0.013724 0.02781
GO:0046394 carboxylic acid biosynthetic process 3.77% (2/53) 3.49 0.013724 0.02781
GO:0043648 dicarboxylic acid metabolic process 1.89% (1/53) 6.01 0.01544 0.03088
GO:0072528 pyrimidine-containing compound biosynthetic process 1.89% (1/53) 5.59 0.020534 0.040542
GO:0044283 small molecule biosynthetic process 3.77% (2/53) 3.17 0.020824 0.040594
GO:0034660 ncRNA metabolic process 3.77% (2/53) 3.13 0.021973 0.041776
GO:0009067 aspartate family amino acid biosynthetic process 1.89% (1/53) 5.5 0.021804 0.041973
GO:0072527 pyrimidine-containing compound metabolic process 1.89% (1/53) 5.34 0.024338 0.045709
GO:0009066 aspartate family amino acid metabolic process 1.89% (1/53) 5.2 0.026866 0.049848
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.073 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.111 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_59 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.046 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_100 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_112 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_127 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_147 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_161 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_194 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_196 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_198 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_276 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.045 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_85 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_61 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.025 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_100 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (53) (download table)

InterPro Domains

GO Terms

Family Terms