Coexpression cluster: Cluster_216 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0098796 membrane protein complex 7.92% (8/101) 3.54 0.0 0.000165
GO:1902600 proton transmembrane transport 3.96% (4/101) 4.66 2e-05 0.002203
GO:0055086 nucleobase-containing small molecule metabolic process 4.95% (5/101) 4.02 1.5e-05 0.002564
GO:0009141 nucleoside triphosphate metabolic process 2.97% (3/101) 4.69 0.000219 0.005207
GO:0046034 ATP metabolic process 2.97% (3/101) 4.72 0.000205 0.005259
GO:0009199 ribonucleoside triphosphate metabolic process 2.97% (3/101) 4.72 0.000205 0.005259
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.97% (3/101) 4.72 0.000205 0.005259
GO:0009144 purine nucleoside triphosphate metabolic process 2.97% (3/101) 4.72 0.000205 0.005259
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 1.98% (2/101) 6.34 0.000268 0.005953
GO:1901362 organic cyclic compound biosynthetic process 5.94% (6/101) 2.74 0.000297 0.006176
GO:0098662 inorganic cation transmembrane transport 3.96% (4/101) 3.96 0.000133 0.006336
GO:0098660 inorganic ion transmembrane transport 3.96% (4/101) 3.89 0.00016 0.006645
GO:0098800 inner mitochondrial membrane protein complex 2.97% (3/101) 4.96 0.000125 0.006947
GO:0034220 monoatomic ion transmembrane transport 3.96% (4/101) 4.05 0.000106 0.007048
GO:0098798 mitochondrial protein-containing complex 2.97% (3/101) 4.75 0.000192 0.007114
GO:0006812 monoatomic cation transport 4.95% (5/101) 3.04 0.000381 0.007463
GO:0098655 monoatomic cation transmembrane transport 3.96% (4/101) 4.09 9.4e-05 0.007809
GO:0032991 protein-containing complex 7.92% (8/101) 2.12 0.000542 0.009498
GO:0009150 purine ribonucleotide metabolic process 2.97% (3/101) 4.12 0.000709 0.009841
GO:0009259 ribonucleotide metabolic process 2.97% (3/101) 4.12 0.000709 0.009841
GO:0019693 ribose phosphate metabolic process 2.97% (3/101) 4.12 0.000709 0.009841
GO:0044281 small molecule metabolic process 6.93% (7/101) 2.32 0.000536 0.009911
GO:0009058 biosynthetic process 10.89% (11/101) 1.69 0.00061 0.010158
GO:1901135 carbohydrate derivative metabolic process 3.96% (4/101) 3.35 0.00067 0.010617
GO:0009073 aromatic amino acid family biosynthetic process 1.98% (2/101) 5.49 0.0009 0.011989
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 1.98% (2/101) 5.41 0.001004 0.012863
GO:0006811 monoatomic ion transport 4.95% (5/101) 2.67 0.001185 0.014619
GO:0006163 purine nucleotide metabolic process 2.97% (3/101) 3.79 0.001377 0.015283
GO:1901137 carbohydrate derivative biosynthetic process 2.97% (3/101) 3.82 0.001289 0.015326
GO:0019438 aromatic compound biosynthetic process 4.95% (5/101) 2.63 0.001359 0.015601
GO:0019898 extrinsic component of membrane 1.98% (2/101) 5.08 0.001608 0.016226
GO:0072521 purine-containing compound metabolic process 2.97% (3/101) 3.74 0.001516 0.016287
GO:0044249 cellular biosynthetic process 8.91% (9/101) 1.74 0.001573 0.01637
GO:0009072 aromatic amino acid metabolic process 1.98% (2/101) 5.02 0.001745 0.017091
GO:1901566 organonitrogen compound biosynthetic process 6.93% (7/101) 2.0 0.001909 0.018158
GO:0006753 nucleoside phosphate metabolic process 2.97% (3/101) 3.52 0.002344 0.021098
GO:0009117 nucleotide metabolic process 2.97% (3/101) 3.53 0.002282 0.021108
GO:0044599 AP-5 adaptor complex 0.99% (1/101) 8.66 0.002469 0.021637
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 1.98% (2/101) 4.71 0.002679 0.022873
GO:1901576 organic substance biosynthetic process 8.91% (9/101) 1.58 0.003247 0.026376
GO:0009654 photosystem II oxygen evolving complex 1.98% (2/101) 4.57 0.003216 0.026776
GO:0055085 transmembrane transport 7.92% (8/101) 1.67 0.003735 0.02961
GO:0009142 nucleoside triphosphate biosynthetic process 1.98% (2/101) 4.38 0.004214 0.029859
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.98% (2/101) 4.38 0.004214 0.029859
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.98% (2/101) 4.38 0.004214 0.029859
GO:0006754 ATP biosynthetic process 1.98% (2/101) 4.38 0.004214 0.029859
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.98% (2/101) 4.38 0.004214 0.029859
GO:1990204 oxidoreductase complex 1.98% (2/101) 4.24 0.005103 0.030344
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 0.99% (1/101) 7.66 0.004932 0.030416
GO:0004107 chorismate synthase activity 0.99% (1/101) 7.66 0.004932 0.030416
GO:0051002 ligase activity, forming nitrogen-metal bonds 0.99% (1/101) 7.66 0.004932 0.030416
GO:0046422 violaxanthin de-epoxidase activity 0.99% (1/101) 7.66 0.004932 0.030416
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 0.99% (1/101) 7.66 0.004932 0.030416
GO:0016851 magnesium chelatase activity 0.99% (1/101) 7.66 0.004932 0.030416
GO:0005575 cellular_component 17.82% (18/101) 0.94 0.005083 0.030777
GO:0009523 photosystem II 1.98% (2/101) 4.27 0.004873 0.033809
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0004615 phosphomannomutase activity 0.99% (1/101) 7.08 0.007389 0.035152
GO:0009225 nucleotide-sugar metabolic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0019673 GDP-mannose metabolic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0008373 sialyltransferase activity 0.99% (1/101) 7.08 0.007389 0.035152
GO:0009226 nucleotide-sugar biosynthetic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0004590 orotidine-5'-phosphate decarboxylase activity 0.99% (1/101) 7.08 0.007389 0.035152
GO:0006206 pyrimidine nucleobase metabolic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0009298 GDP-mannose biosynthetic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:0019856 pyrimidine nucleobase biosynthetic process 0.99% (1/101) 7.08 0.007389 0.035152
GO:1901360 organic cyclic compound metabolic process 6.93% (7/101) 1.63 0.007846 0.036799
GO:0009260 ribonucleotide biosynthetic process 1.98% (2/101) 3.96 0.007386 0.040993
GO:0046390 ribose phosphate biosynthetic process 1.98% (2/101) 3.96 0.007386 0.040993
GO:0009152 purine ribonucleotide biosynthetic process 1.98% (2/101) 3.96 0.007386 0.040993
GO:0006725 cellular aromatic compound metabolic process 6.93% (7/101) 1.65 0.007076 0.041341
GO:0018130 heterocycle biosynthetic process 3.96% (4/101) 2.28 0.009589 0.044347
GO:0006810 transport 8.91% (9/101) 1.32 0.010144 0.046273
GO:0051234 establishment of localization 8.91% (9/101) 1.32 0.010357 0.046608
GO:0009987 cellular process 23.76% (24/101) 0.69 0.010593 0.047034
GO:0006164 purine nucleotide biosynthetic process 1.98% (2/101) 3.64 0.011348 0.049721
GO:0051179 localization 8.91% (9/101) 1.29 0.011522 0.04983
GO:0019637 organophosphate metabolic process 2.97% (3/101) 2.65 0.012458 0.049983
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_25 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_61 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_71 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_85 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_107 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_110 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_118 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_132 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_140 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_203 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_224 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_228 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_249 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_262 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_264 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_267 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_272 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_276 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_286 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_292 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_860 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_29 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_132 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_236 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_158 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (101) (download table)

InterPro Domains

GO Terms

Family Terms