Coexpression cluster: Cluster_130 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 4.62% (3/65) 5.05 0.000105 0.002413
GO:1901360 organic cyclic compound metabolic process 12.31% (8/65) 2.45 0.000103 0.002608
GO:0097159 organic cyclic compound binding 35.38% (23/65) 1.28 2.4e-05 0.002729
GO:1901363 heterocyclic compound binding 35.38% (23/65) 1.28 2.4e-05 0.002729
GO:0140640 catalytic activity, acting on a nucleic acid 9.23% (6/65) 3.03 9.6e-05 0.002737
GO:1901265 nucleoside phosphate binding 21.54% (14/65) 1.61 0.00015 0.002871
GO:0000166 nucleotide binding 21.54% (14/65) 1.61 0.00015 0.002871
GO:0017076 purine nucleotide binding 21.54% (14/65) 1.67 9.1e-05 0.002969
GO:0003676 nucleic acid binding 20.0% (13/65) 1.62 0.000252 0.003035
GO:0036094 small molecule binding 21.54% (14/65) 1.54 0.000243 0.003086
GO:0034660 ncRNA metabolic process 6.15% (4/65) 3.84 0.000183 0.003219
GO:0003723 RNA binding 10.77% (7/65) 2.49 0.000242 0.003256
GO:0097367 carbohydrate derivative binding 20.0% (13/65) 1.63 0.000232 0.003325
GO:0032553 ribonucleotide binding 20.0% (13/65) 1.64 0.000218 0.00333
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.62% (3/65) 4.42 0.000382 0.003361
GO:0043039 tRNA aminoacylation 4.62% (3/65) 4.42 0.000382 0.003361
GO:0043038 amino acid activation 4.62% (3/65) 4.42 0.000382 0.003361
GO:0004812 aminoacyl-tRNA ligase activity 4.62% (3/65) 4.42 0.000382 0.003361
GO:0034641 cellular nitrogen compound metabolic process 13.85% (9/65) 2.05 0.000294 0.00337
GO:0032555 purine ribonucleotide binding 20.0% (13/65) 1.65 0.000206 0.003373
GO:0006418 tRNA aminoacylation for protein translation 4.62% (3/65) 4.53 0.00031 0.003381
GO:0006520 amino acid metabolic process 6.15% (4/65) 3.62 0.000327 0.003399
GO:0035639 purine ribonucleoside triphosphate binding 20.0% (13/65) 1.77 9e-05 0.003436
GO:0006725 cellular aromatic compound metabolic process 12.31% (8/65) 2.48 8.9e-05 0.004096
GO:0046434 organophosphate catabolic process 3.08% (2/65) 7.13 8.9e-05 0.005088
GO:0043168 anion binding 20.0% (13/65) 1.47 0.000663 0.00562
GO:0046483 heterocycle metabolic process 12.31% (8/65) 2.48 8.9e-05 0.006775
GO:0006399 tRNA metabolic process 4.62% (3/65) 4.0 0.000897 0.007338
GO:0140101 catalytic activity, acting on a tRNA 4.62% (3/65) 3.98 0.000942 0.007437
GO:0140098 catalytic activity, acting on RNA 6.15% (4/65) 3.05 0.001401 0.010693
GO:0006423 cysteinyl-tRNA aminoacylation 1.54% (1/65) 9.3 0.001589 0.010703
GO:0004817 cysteine-tRNA ligase activity 1.54% (1/65) 9.3 0.001589 0.010703
GO:0009143 nucleoside triphosphate catabolic process 1.54% (1/65) 9.3 0.001589 0.010703
GO:0016070 RNA metabolic process 7.69% (5/65) 2.59 0.001473 0.010885
GO:0006139 nucleobase-containing compound metabolic process 9.23% (6/65) 2.22 0.001836 0.012012
GO:0044281 small molecule metabolic process 7.69% (5/65) 2.47 0.002111 0.01343
GO:0005525 GTP binding 6.15% (4/65) 2.83 0.00249 0.015003
GO:0032561 guanyl ribonucleotide binding 6.15% (4/65) 2.83 0.00249 0.015003
GO:0006082 organic acid metabolic process 6.15% (4/65) 2.76 0.002916 0.015531
GO:0016874 ligase activity 4.62% (3/65) 3.44 0.002723 0.015589
GO:0043436 oxoacid metabolic process 6.15% (4/65) 2.77 0.002888 0.015748
GO:0019752 carboxylic acid metabolic process 6.15% (4/65) 2.77 0.002888 0.015748
GO:0019001 guanyl nucleotide binding 6.15% (4/65) 2.79 0.002697 0.015837
GO:0003690 double-stranded DNA binding 3.08% (2/65) 4.39 0.004147 0.021103
GO:0004386 helicase activity 3.08% (2/65) 4.39 0.004147 0.021103
GO:0030554 adenyl nucleotide binding 15.38% (10/65) 1.39 0.004396 0.021417
GO:0090304 nucleic acid metabolic process 7.69% (5/65) 2.23 0.004327 0.021542
GO:0070727 cellular macromolecule localization 4.62% (3/65) 3.11 0.00518 0.021566
GO:0008104 protein localization 4.62% (3/65) 3.11 0.00518 0.021566
GO:0033036 macromolecule localization 4.62% (3/65) 3.11 0.00518 0.021566
GO:0045184 establishment of protein localization 4.62% (3/65) 3.11 0.00518 0.021566
GO:0005488 binding 40.0% (26/65) 0.68 0.005338 0.021828
GO:1901292 nucleoside phosphate catabolic process 1.54% (1/65) 7.71 0.00476 0.022244
GO:0004455 ketol-acid reductoisomerase activity 1.54% (1/65) 7.71 0.00476 0.022244
GO:0015031 protein transport 4.62% (3/65) 3.14 0.004859 0.022253
GO:0005524 ATP binding 13.85% (9/65) 1.46 0.005012 0.022505
GO:0006788 heme oxidation 1.54% (1/65) 7.3 0.006341 0.02305
GO:0046654 tetrahydrofolate biosynthetic process 1.54% (1/65) 7.3 0.006341 0.02305
GO:0047429 nucleoside triphosphate diphosphatase activity 1.54% (1/65) 7.3 0.006341 0.02305
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen 1.54% (1/65) 7.3 0.006341 0.02305
GO:0004392 heme oxygenase (decyclizing) activity 1.54% (1/65) 7.3 0.006341 0.02305
GO:0004146 dihydrofolate reductase activity 1.54% (1/65) 7.3 0.006341 0.02305
GO:0046653 tetrahydrofolate metabolic process 1.54% (1/65) 7.3 0.006341 0.02305
GO:0003674 molecular_function 56.92% (37/65) 0.47 0.006863 0.02418
GO:0008270 zinc ion binding 6.15% (4/65) 2.41 0.006807 0.024358
GO:0009081 branched-chain amino acid metabolic process 1.54% (1/65) 6.98 0.00792 0.026673
GO:0009082 branched-chain amino acid biosynthetic process 1.54% (1/65) 6.98 0.00792 0.026673
GO:0009396 folic acid-containing compound biosynthetic process 1.54% (1/65) 6.98 0.00792 0.026673
GO:0071705 nitrogen compound transport 4.62% (3/65) 2.78 0.009564 0.029597
GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity 1.54% (1/65) 6.71 0.009497 0.029792
GO:0046168 glycerol-3-phosphate catabolic process 1.54% (1/65) 6.71 0.009497 0.029792
GO:0006072 glycerol-3-phosphate metabolic process 1.54% (1/65) 6.71 0.009497 0.029792
GO:0052646 alditol phosphate metabolic process 1.54% (1/65) 6.71 0.009497 0.029792
GO:0051641 cellular localization 4.62% (3/65) 2.76 0.009946 0.030369
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.08% (2/65) 3.73 0.010095 0.030417
GO:0032559 adenyl ribonucleotide binding 13.85% (9/65) 1.32 0.009254 0.030714
GO:0042168 heme metabolic process 1.54% (1/65) 6.49 0.011071 0.0313
GO:0006433 prolyl-tRNA aminoacylation 1.54% (1/65) 6.49 0.011071 0.0313
GO:0004827 proline-tRNA ligase activity 1.54% (1/65) 6.49 0.011071 0.0313
GO:0043167 ion binding 21.54% (14/65) 0.96 0.010545 0.031362
GO:0071702 organic substance transport 4.62% (3/65) 2.72 0.010838 0.031819
GO:0022411 cellular component disassembly 1.54% (1/65) 6.3 0.012643 0.0329
GO:0008079 translation termination factor activity 1.54% (1/65) 6.3 0.012643 0.0329
GO:0006415 translational termination 1.54% (1/65) 6.3 0.012643 0.0329
GO:0032984 protein-containing complex disassembly 1.54% (1/65) 6.3 0.012643 0.0329
GO:0003747 translation release factor activity 1.54% (1/65) 6.3 0.012643 0.0329
GO:0006760 folic acid-containing compound metabolic process 1.54% (1/65) 6.3 0.012643 0.0329
GO:0042559 pteridine-containing compound biosynthetic process 1.54% (1/65) 6.3 0.012643 0.0329
GO:0044237 cellular metabolic process 18.46% (12/65) 1.02 0.013433 0.034564
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 3.08% (2/65) 3.38 0.015986 0.040676
GO:0005737 cytoplasm 3.08% (2/65) 3.31 0.017511 0.043587
GO:0042558 pteridine-containing compound metabolic process 1.54% (1/65) 5.84 0.017343 0.043644
GO:0042398 cellular modified amino acid biosynthetic process 1.54% (1/65) 5.71 0.018905 0.046057
GO:0042440 pigment metabolic process 1.54% (1/65) 5.71 0.018905 0.046057
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_64 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_76 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_97 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_184 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_216 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_241 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_248 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_269 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_272 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_156 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_168 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_222 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_250 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_149 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (65) (download table)

InterPro Domains

GO Terms

Family Terms