Coexpression cluster: Cluster_28 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901576 organic substance biosynthetic process 66.31% (124/187) 4.61 0.0 0.0
GO:0043170 macromolecule metabolic process 66.31% (124/187) 2.89 0.0 0.0
GO:0043226 organelle 63.1% (118/187) 5.16 0.0 0.0
GO:0043228 non-membrane-bounded organelle 63.1% (118/187) 5.9 0.0 0.0
GO:0043229 intracellular organelle 63.1% (118/187) 5.16 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 63.1% (118/187) 5.9 0.0 0.0
GO:0043603 amide metabolic process 65.78% (123/187) 5.97 0.0 0.0
GO:0043604 amide biosynthetic process 65.78% (123/187) 6.1 0.0 0.0
GO:0044237 cellular metabolic process 66.31% (124/187) 2.89 0.0 0.0
GO:0044238 primary metabolic process 65.78% (123/187) 2.48 0.0 0.0
GO:0044249 cellular biosynthetic process 66.31% (124/187) 4.76 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 65.78% (123/187) 5.21 0.0 0.0
GO:0071704 organic substance metabolic process 66.31% (124/187) 2.44 0.0 0.0
GO:0110165 cellular anatomical entity 63.1% (118/187) 3.28 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 65.78% (123/187) 2.98 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 65.78% (123/187) 5.42 0.0 0.0
GO:0043043 peptide biosynthetic process 65.78% (123/187) 6.12 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 65.78% (123/187) 4.42 0.0 0.0
GO:0005575 cellular_component 64.71% (121/187) 3.04 0.0 0.0
GO:0003735 structural constituent of ribosome 65.78% (123/187) 6.14 0.0 0.0
GO:0005198 structural molecule activity 65.78% (123/187) 5.94 0.0 0.0
GO:0005840 ribosome 63.1% (118/187) 6.13 0.0 0.0
GO:0006412 translation 65.78% (123/187) 6.15 0.0 0.0
GO:0006518 peptide metabolic process 65.78% (123/187) 6.01 0.0 0.0
GO:0006807 nitrogen compound metabolic process 65.78% (123/187) 2.75 0.0 0.0
GO:0019538 protein metabolic process 65.78% (123/187) 3.19 0.0 0.0
GO:0008152 metabolic process 66.31% (124/187) 2.32 0.0 0.0
GO:0009058 biosynthetic process 66.31% (124/187) 4.46 0.0 0.0
GO:0009059 macromolecule biosynthetic process 66.31% (124/187) 5.43 0.0 0.0
GO:0009987 cellular process 66.31% (124/187) 2.25 0.0 0.0
GO:0008150 biological_process 66.31% (124/187) 1.61 0.0 0.0
GO:0003674 molecular_function 72.19% (135/187) 0.97 0.0 0.0
GO:0019843 rRNA binding 3.21% (6/187) 5.38 0.0 0.0
GO:0003723 RNA binding 9.09% (17/187) 2.41 0.0 0.0
GO:0015934 large ribosomal subunit 1.6% (3/187) 6.7 2e-06 4e-06
GO:0044391 ribosomal subunit 1.6% (3/187) 6.7 2e-06 4e-06
GO:0008097 5S rRNA binding 1.07% (2/187) 6.38 0.000228 0.000424
GO:1990904 ribonucleoprotein complex 1.6% (3/187) 4.0 0.000879 0.001596
GO:0003676 nucleic acid binding 9.63% (18/187) 0.91 0.007697 0.013618
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.124 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.158 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_54 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.045 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.035 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.063 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.114 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.038 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_301 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.082 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_169 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (187) (download table)

InterPro Domains

GO Terms

Family Terms