Coexpression cluster: Cluster_151 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009451 RNA modification 4.71% (4/85) 5.03 7e-06 0.000241
GO:0097367 carbohydrate derivative binding 21.18% (18/85) 1.71 7e-06 0.000262
GO:0032553 ribonucleotide binding 21.18% (18/85) 1.72 6e-06 0.00028
GO:1901566 organonitrogen compound biosynthetic process 11.76% (10/85) 2.76 2e-06 0.000293
GO:0032555 purine ribonucleotide binding 21.18% (18/85) 1.73 6e-06 0.00031
GO:0034641 cellular nitrogen compound metabolic process 15.29% (13/85) 2.2 5e-06 0.000312
GO:0006400 tRNA modification 3.53% (3/85) 6.59 4e-06 0.000343
GO:0017076 purine nucleotide binding 21.18% (18/85) 1.65 1.2e-05 0.00036
GO:0035639 purine ribonucleoside triphosphate binding 21.18% (18/85) 1.85 2e-06 0.000484
GO:1901265 nucleoside phosphate binding 21.18% (18/85) 1.58 2.3e-05 0.00056
GO:0000166 nucleotide binding 21.18% (18/85) 1.58 2.3e-05 0.00056
GO:0043168 anion binding 21.18% (18/85) 1.55 3e-05 0.000668
GO:0008033 tRNA processing 3.53% (3/85) 5.59 3.4e-05 0.000691
GO:0005840 ribosome 8.24% (7/85) 2.91 4.3e-05 0.000768
GO:0044271 cellular nitrogen compound biosynthetic process 10.59% (9/85) 2.41 5.1e-05 0.000798
GO:0036094 small molecule binding 21.18% (18/85) 1.51 4.2e-05 0.000807
GO:0043043 peptide biosynthetic process 8.24% (7/85) 2.84 5.8e-05 0.000807
GO:0003735 structural constituent of ribosome 8.24% (7/85) 2.85 5.5e-05 0.000808
GO:0006412 translation 8.24% (7/85) 2.87 5e-05 0.000838
GO:0043604 amide biosynthetic process 8.24% (7/85) 2.82 6.3e-05 0.000841
GO:0043228 non-membrane-bounded organelle 8.24% (7/85) 2.72 9.6e-05 0.000945
GO:0043232 intracellular non-membrane-bounded organelle 8.24% (7/85) 2.72 9.6e-05 0.000945
GO:0005198 structural molecule activity 8.24% (7/85) 2.69 0.000109 0.00097
GO:0006518 peptide metabolic process 8.24% (7/85) 2.78 7.7e-05 0.000972
GO:0044249 cellular biosynthetic process 11.76% (10/85) 2.14 9.2e-05 0.000975
GO:0043226 organelle 10.59% (9/85) 2.27 0.000107 0.000977
GO:0043229 intracellular organelle 10.59% (9/85) 2.27 0.000107 0.000977
GO:0043603 amide metabolic process 8.24% (7/85) 2.74 8.9e-05 0.000988
GO:0005524 ATP binding 16.47% (14/85) 1.71 8.2e-05 0.000988
GO:0008175 tRNA methyltransferase activity 2.35% (2/85) 7.1 8.9e-05 0.001029
GO:0097159 organic cyclic compound binding 30.59% (26/85) 1.07 0.000125 0.001038
GO:1901363 heterocyclic compound binding 30.59% (26/85) 1.07 0.000125 0.001038
GO:0032559 adenyl ribonucleotide binding 16.47% (14/85) 1.57 0.000225 0.001709
GO:0006457 protein folding 3.53% (3/85) 4.69 0.000222 0.001734
GO:1901576 organic substance biosynthetic process 11.76% (10/85) 1.98 0.00022 0.001773
GO:0140662 ATP-dependent protein folding chaperone 3.53% (3/85) 4.61 0.000259 0.001912
GO:0044183 protein folding chaperone 3.53% (3/85) 4.5 0.000329 0.002367
GO:0030554 adenyl nucleotide binding 16.47% (14/85) 1.49 0.000408 0.002785
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.06% (6/85) 2.65 0.0004 0.0028
GO:0016462 pyrophosphatase activity 7.06% (6/85) 2.59 0.000512 0.003403
GO:0009058 biosynthetic process 11.76% (10/85) 1.8 0.00058 0.003671
GO:0016817 hydrolase activity, acting on acid anhydrides 7.06% (6/85) 2.54 0.000595 0.003678
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.06% (6/85) 2.55 0.000576 0.003737
GO:0016887 ATP hydrolysis activity 4.71% (4/85) 3.32 0.000722 0.004267
GO:0009059 macromolecule biosynthetic process 8.24% (7/85) 2.24 0.000717 0.004335
GO:0034470 ncRNA processing 3.53% (3/85) 4.04 0.000837 0.004837
GO:0005525 GTP binding 5.88% (5/85) 2.76 0.00089 0.00493
GO:0032561 guanyl ribonucleotide binding 5.88% (5/85) 2.76 0.00089 0.00493
GO:0019001 guanyl nucleotide binding 5.88% (5/85) 2.73 0.000982 0.005333
GO:0008173 RNA methyltransferase activity 2.35% (2/85) 5.1 0.001557 0.008123
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.35% (2/85) 5.1 0.001557 0.008123
GO:0006399 tRNA metabolic process 3.53% (3/85) 3.61 0.001946 0.009953
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 1.18% (1/85) 8.91 0.002078 0.01005
GO:0016426 tRNA (adenine) methyltransferase activity 1.18% (1/85) 8.91 0.002078 0.01005
GO:0043167 ion binding 22.35% (19/85) 1.02 0.002061 0.010346
GO:0003674 molecular_function 56.47% (48/85) 0.46 0.002825 0.013419
GO:0005488 binding 38.82% (33/85) 0.64 0.003258 0.015202
GO:0018202 peptidyl-histidine modification 1.18% (1/85) 7.91 0.004152 0.016733
GO:0017183 protein histidyl modification to diphthamide 1.18% (1/85) 7.91 0.004152 0.016733
GO:0004055 argininosuccinate synthase activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0003937 IMP cyclohydrolase activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 1.18% (1/85) 7.91 0.004152 0.016733
GO:0016741 transferase activity, transferring one-carbon groups 4.71% (4/85) 2.65 0.003911 0.017935
GO:0030488 tRNA methylation 1.18% (1/85) 7.33 0.006221 0.022984
GO:0016151 nickel cation binding 1.18% (1/85) 7.33 0.006221 0.022984
GO:0043527 tRNA methyltransferase complex 1.18% (1/85) 7.33 0.006221 0.022984
GO:0031515 tRNA (m1A) methyltransferase complex 1.18% (1/85) 7.33 0.006221 0.022984
GO:0034708 methyltransferase complex 1.18% (1/85) 7.33 0.006221 0.022984
GO:0034660 ncRNA metabolic process 3.53% (3/85) 3.04 0.005973 0.023713
GO:0006139 nucleobase-containing compound metabolic process 7.06% (6/85) 1.83 0.006976 0.025419
GO:0033588 elongator holoenzyme complex 1.18% (1/85) 6.91 0.008286 0.026556
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.18% (1/85) 6.91 0.008286 0.026556
GO:0006526 arginine biosynthetic process 1.18% (1/85) 6.91 0.008286 0.026556
GO:0006525 arginine metabolic process 1.18% (1/85) 6.91 0.008286 0.026556
GO:0019206 nucleoside kinase activity 1.18% (1/85) 6.91 0.008286 0.026556
GO:0002098 tRNA wobble uridine modification 1.18% (1/85) 6.91 0.008286 0.026556
GO:0004797 thymidine kinase activity 1.18% (1/85) 6.91 0.008286 0.026556
GO:0019136 deoxynucleoside kinase activity 1.18% (1/85) 6.91 0.008286 0.026556
GO:0019238 cyclohydrolase activity 1.18% (1/85) 6.91 0.008286 0.026556
GO:0072522 purine-containing compound biosynthetic process 2.35% (2/85) 3.82 0.008894 0.028164
GO:0006164 purine nucleotide biosynthetic process 2.35% (2/85) 3.89 0.008154 0.029309
GO:0006396 RNA processing 3.53% (3/85) 2.74 0.01044 0.032289
GO:0009987 cellular process 24.71% (21/85) 0.75 0.010347 0.03238
GO:0006725 cellular aromatic compound metabolic process 7.06% (6/85) 1.68 0.011283 0.034107
GO:0046483 heterocycle metabolic process 7.06% (6/85) 1.68 0.011227 0.034325
GO:0006188 IMP biosynthetic process 1.18% (1/85) 6.33 0.012404 0.034731
GO:0046040 IMP metabolic process 1.18% (1/85) 6.33 0.012404 0.034731
GO:0002097 tRNA wobble base modification 1.18% (1/85) 6.33 0.012404 0.034731
GO:0016423 tRNA (guanine) methyltransferase activity 1.18% (1/85) 6.33 0.012404 0.034731
GO:0009165 nucleotide biosynthetic process 2.35% (2/85) 3.59 0.012141 0.035883
GO:1901293 nucleoside phosphate biosynthetic process 2.35% (2/85) 3.59 0.012141 0.035883
GO:1901360 organic cyclic compound metabolic process 7.06% (6/85) 1.65 0.012343 0.036078
GO:0006163 purine nucleotide metabolic process 2.35% (2/85) 3.45 0.014551 0.039496
GO:0019205 nucleobase-containing compound kinase activity 1.18% (1/85) 6.1 0.014457 0.039644
GO:0016842 amidine-lyase activity 1.18% (1/85) 6.1 0.014457 0.039644
GO:0009124 nucleoside monophosphate biosynthetic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009126 purine nucleoside monophosphate metabolic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009156 ribonucleoside monophosphate biosynthetic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009161 ribonucleoside monophosphate metabolic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009123 nucleoside monophosphate metabolic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.18% (1/85) 5.91 0.016505 0.041031
GO:0072521 purine-containing compound metabolic process 2.35% (2/85) 3.4 0.015504 0.041657
GO:0006807 nitrogen compound metabolic process 17.65% (15/85) 0.84 0.01798 0.044285
GO:0006753 nucleoside phosphate metabolic process 2.35% (2/85) 3.18 0.020652 0.04949
GO:0009117 nucleotide metabolic process 2.35% (2/85) 3.2 0.020289 0.049513
GO:0044237 cellular metabolic process 16.47% (14/85) 0.86 0.020907 0.049654
GO:0061608 nuclear import signal receptor activity 1.18% (1/85) 5.59 0.020589 0.049788
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.037 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_23 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_266 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_285 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_628 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_188 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_324 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (85) (download table)

InterPro Domains

GO Terms

Family Terms