Coexpression cluster: Cluster_180 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004812 aminoacyl-tRNA ligase activity 7.94% (5/63) 5.21 0.0 9e-06
GO:0043038 amino acid activation 7.94% (5/63) 5.21 0.0 9e-06
GO:0043039 tRNA aminoacylation 7.94% (5/63) 5.21 0.0 9e-06
GO:0016875 ligase activity, forming carbon-oxygen bonds 7.94% (5/63) 5.21 0.0 9e-06
GO:0140101 catalytic activity, acting on a tRNA 7.94% (5/63) 4.76 1e-06 2.7e-05
GO:0006399 tRNA metabolic process 7.94% (5/63) 4.78 1e-06 2.8e-05
GO:0034641 cellular nitrogen compound metabolic process 19.05% (12/63) 2.52 1e-06 2.9e-05
GO:0006418 tRNA aminoacylation for protein translation 7.94% (5/63) 5.31 0.0 3.2e-05
GO:0034660 ncRNA metabolic process 7.94% (5/63) 4.21 8e-06 0.000139
GO:0016874 ligase activity 7.94% (5/63) 4.22 8e-06 0.000146
GO:0006520 amino acid metabolic process 7.94% (5/63) 3.99 1.7e-05 0.000264
GO:0140640 catalytic activity, acting on a nucleic acid 9.52% (6/63) 3.07 8e-05 0.001163
GO:0140098 catalytic activity, acting on RNA 7.94% (5/63) 3.42 0.000107 0.001428
GO:0032553 ribonucleotide binding 20.63% (13/63) 1.68 0.000157 0.001605
GO:0097367 carbohydrate derivative binding 20.63% (13/63) 1.67 0.000167 0.001616
GO:0016070 RNA metabolic process 9.52% (6/63) 2.9 0.000156 0.001693
GO:0005524 ATP binding 17.46% (11/63) 1.8 0.000273 0.001699
GO:0006082 organic acid metabolic process 7.94% (5/63) 3.13 0.000273 0.001758
GO:0032559 adenyl ribonucleotide binding 19.05% (12/63) 1.78 0.000152 0.001765
GO:0043436 oxoacid metabolic process 7.94% (5/63) 3.13 0.000269 0.001803
GO:0019752 carboxylic acid metabolic process 7.94% (5/63) 3.13 0.000269 0.001803
GO:0032555 purine ribonucleotide binding 20.63% (13/63) 1.69 0.000148 0.001841
GO:0035639 purine ribonucleoside triphosphate binding 19.05% (12/63) 1.7 0.000269 0.001952
GO:0030554 adenyl nucleotide binding 19.05% (12/63) 1.7 0.000262 0.001983
GO:0044271 cellular nitrogen compound biosynthetic process 11.11% (7/63) 2.48 0.000257 0.002033
GO:0017076 purine nucleotide binding 20.63% (13/63) 1.61 0.000252 0.002088
GO:0006139 nucleobase-containing compound metabolic process 11.11% (7/63) 2.48 0.000249 0.00217
GO:0044281 small molecule metabolic process 9.52% (6/63) 2.78 0.000243 0.002222
GO:0000166 nucleotide binding 20.63% (13/63) 1.54 0.0004 0.00232
GO:1901265 nucleoside phosphate binding 20.63% (13/63) 1.54 0.0004 0.00232
GO:0044237 cellular metabolic process 23.81% (15/63) 1.39 0.000424 0.00238
GO:0006725 cellular aromatic compound metabolic process 11.11% (7/63) 2.33 0.000466 0.002455
GO:0043168 anion binding 20.63% (13/63) 1.52 0.000484 0.002474
GO:0046483 heterocycle metabolic process 11.11% (7/63) 2.34 0.000463 0.002515
GO:1901360 organic cyclic compound metabolic process 11.11% (7/63) 2.31 0.000524 0.002603
GO:1901576 organic substance biosynthetic process 12.7% (8/63) 2.09 0.000551 0.002662
GO:0090304 nucleic acid metabolic process 9.52% (6/63) 2.54 0.00059 0.002776
GO:0036094 small molecule binding 20.63% (13/63) 1.48 0.000619 0.002834
GO:0005840 ribosome 7.94% (5/63) 2.85 0.000649 0.002896
GO:0006412 translation 7.94% (5/63) 2.82 0.000724 0.003148
GO:0009059 macromolecule biosynthetic process 9.52% (6/63) 2.45 0.000797 0.003153
GO:1901566 organonitrogen compound biosynthetic process 9.52% (6/63) 2.46 0.000774 0.003208
GO:0043043 peptide biosynthetic process 7.94% (5/63) 2.79 0.000797 0.003224
GO:0003735 structural constituent of ribosome 7.94% (5/63) 2.8 0.000767 0.003255
GO:0043604 amide biosynthetic process 7.94% (5/63) 2.77 0.000851 0.003291
GO:0006518 peptide metabolic process 7.94% (5/63) 2.72 0.000977 0.003696
GO:0097159 organic cyclic compound binding 30.16% (19/63) 1.05 0.001172 0.004
GO:1901363 heterocyclic compound binding 30.16% (19/63) 1.05 0.001172 0.004
GO:0043603 amide metabolic process 7.94% (5/63) 2.69 0.001087 0.004025
GO:0043232 intracellular non-membrane-bounded organelle 7.94% (5/63) 2.67 0.001146 0.004068
GO:0043228 non-membrane-bounded organelle 7.94% (5/63) 2.67 0.001146 0.004068
GO:0009058 biosynthetic process 12.7% (8/63) 1.91 0.001222 0.004089
GO:0005198 structural molecule activity 7.94% (5/63) 2.64 0.001259 0.004133
GO:0044249 cellular biosynthetic process 11.11% (7/63) 2.05 0.001443 0.004651
GO:0006413 translational initiation 3.17% (2/63) 4.73 0.00262 0.00829
GO:0003876 AMP deaminase activity 1.59% (1/63) 8.34 0.003078 0.008368
GO:0000469 obsolete cleavage involved in rRNA processing 1.59% (1/63) 8.34 0.003078 0.008368
GO:0043101 purine-containing compound salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0106380 purine ribonucleotide salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0032261 purine nucleotide salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0032264 IMP salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0047623 adenosine-phosphate deaminase activity 1.59% (1/63) 8.34 0.003078 0.008368
GO:0043094 cellular metabolic compound salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0043173 nucleotide salvage 1.59% (1/63) 8.34 0.003078 0.008368
GO:0003743 translation initiation factor activity 3.17% (2/63) 4.3 0.0047 0.01258
GO:0004609 phosphatidylserine decarboxylase activity 1.59% (1/63) 7.34 0.006147 0.016205
GO:0003723 RNA binding 7.94% (5/63) 2.05 0.007112 0.018471
GO:0003676 nucleic acid binding 15.87% (10/63) 1.28 0.007331 0.018759
GO:0090079 translation regulator activity, nucleic acid binding 3.17% (2/63) 3.77 0.009507 0.02266
GO:0045182 translation regulator activity 3.17% (2/63) 3.77 0.009507 0.02266
GO:0008135 translation factor activity, RNA binding 3.17% (2/63) 3.77 0.009507 0.02266
GO:0006188 IMP biosynthetic process 1.59% (1/63) 6.76 0.009206 0.022883
GO:0046040 IMP metabolic process 1.59% (1/63) 6.76 0.009206 0.022883
GO:0043226 organelle 7.94% (5/63) 1.85 0.012483 0.026169
GO:0043229 intracellular organelle 7.94% (5/63) 1.85 0.012483 0.026169
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009123 nucleoside monophosphate metabolic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009161 ribonucleoside monophosphate metabolic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009124 nucleoside monophosphate biosynthetic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009126 purine nucleoside monophosphate metabolic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0009156 ribonucleoside monophosphate biosynthetic process 1.59% (1/63) 6.34 0.012256 0.026328
GO:0019239 deaminase activity 1.59% (1/63) 6.17 0.013778 0.028539
GO:0005488 binding 38.1% (24/63) 0.61 0.014286 0.028905
GO:1901564 organonitrogen compound metabolic process 17.46% (11/63) 1.07 0.014182 0.029031
GO:0009987 cellular process 25.4% (16/63) 0.79 0.018057 0.036114
GO:0006807 nitrogen compound metabolic process 19.05% (12/63) 0.96 0.018501 0.036171
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.59% (1/63) 5.76 0.018329 0.036241
GO:0043167 ion binding 20.63% (13/63) 0.9 0.018988 0.036711
GO:0090407 organophosphate biosynthetic process 3.17% (2/63) 3.19 0.020354 0.038918
GO:0008152 metabolic process 23.81% (15/63) 0.79 0.021781 0.041195
GO:0003697 single-stranded DNA binding 1.59% (1/63) 5.44 0.022859 0.042768
GO:0043170 macromolecule metabolic process 17.46% (11/63) 0.95 0.02483 0.045961
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.029 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_100 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_127 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_188 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_211 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_230 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_249 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_251 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_262 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_287 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_38 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_81 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_12 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_97 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms