Coexpression cluster: Cluster_9 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006555 methionine metabolic process 3.16% (3/95) 7.94 0.0 3.2e-05
GO:0006520 amino acid metabolic process 7.37% (7/95) 3.98 0.0 3.9e-05
GO:0090304 nucleic acid metabolic process 10.53% (10/95) 2.77 2e-06 0.000166
GO:0097159 organic cyclic compound binding 31.58% (30/95) 1.2 7e-06 0.000221
GO:1901363 heterocyclic compound binding 31.58% (30/95) 1.2 7e-06 0.000221
GO:0140640 catalytic activity, acting on a nucleic acid 8.42% (8/95) 3.09 5e-06 0.000277
GO:0009066 aspartate family amino acid metabolic process 3.16% (3/95) 6.36 6e-06 0.000289
GO:0000096 sulfur amino acid metabolic process 3.16% (3/95) 5.87 1.8e-05 0.000321
GO:0004176 ATP-dependent peptidase activity 3.16% (3/95) 5.87 1.8e-05 0.000321
GO:0006082 organic acid metabolic process 7.37% (7/95) 3.15 1.5e-05 0.000339
GO:0019752 carboxylic acid metabolic process 7.37% (7/95) 3.16 1.4e-05 0.00037
GO:0043436 oxoacid metabolic process 7.37% (7/95) 3.16 1.4e-05 0.00037
GO:0006139 nucleobase-containing compound metabolic process 10.53% (10/95) 2.42 1.8e-05 0.000374
GO:0140657 ATP-dependent activity 8.42% (8/95) 2.73 2.9e-05 0.000478
GO:0046483 heterocycle metabolic process 10.53% (10/95) 2.29 3.8e-05 0.00049
GO:0003723 RNA binding 9.47% (9/95) 2.47 3.7e-05 0.000507
GO:0006725 cellular aromatic compound metabolic process 10.53% (10/95) 2.3 3.7e-05 0.00053
GO:0009086 methionine biosynthetic process 2.11% (2/95) 7.68 3.5e-05 0.000541
GO:1901360 organic cyclic compound metabolic process 10.53% (10/95) 2.24 5.3e-05 0.000636
GO:1901265 nucleoside phosphate binding 20.0% (19/95) 1.43 6.4e-05 0.000698
GO:0000166 nucleotide binding 20.0% (19/95) 1.43 6.4e-05 0.000698
GO:0008172 S-methyltransferase activity 2.11% (2/95) 7.09 8.8e-05 0.000843
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 2.11% (2/95) 7.09 8.8e-05 0.000843
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 2.11% (2/95) 7.09 8.8e-05 0.000843
GO:0036094 small molecule binding 20.0% (19/95) 1.38 0.0001 0.000921
GO:0035639 purine ribonucleoside triphosphate binding 16.84% (16/95) 1.54 0.000109 0.000962
GO:0016070 RNA metabolic process 7.37% (7/95) 2.67 0.000122 0.001036
GO:0006790 sulfur compound metabolic process 3.16% (3/95) 4.87 0.000151 0.001198
GO:0006399 tRNA metabolic process 4.21% (4/95) 3.92 0.000147 0.001209
GO:0034641 cellular nitrogen compound metabolic process 11.58% (11/95) 1.91 0.000162 0.001243
GO:0005488 binding 38.95% (37/95) 0.8 0.000205 0.001522
GO:0008168 methyltransferase activity 5.26% (5/95) 3.17 0.00025 0.001794
GO:0046394 carboxylic acid biosynthetic process 4.21% (4/95) 3.7 0.000266 0.001798
GO:0016053 organic acid biosynthetic process 4.21% (4/95) 3.7 0.000266 0.001798
GO:0016741 transferase activity, transferring one-carbon groups 5.26% (5/95) 3.11 0.000304 0.001998
GO:0140098 catalytic activity, acting on RNA 5.26% (5/95) 3.09 0.000316 0.002018
GO:0044281 small molecule metabolic process 7.37% (7/95) 2.44 0.000325 0.002022
GO:0003676 nucleic acid binding 14.74% (14/95) 1.53 0.000335 0.002025
GO:0017076 purine nucleotide binding 17.89% (17/95) 1.33 0.000362 0.002137
GO:0008652 amino acid biosynthetic process 3.16% (3/95) 4.33 0.000458 0.002633
GO:1901605 alpha-amino acid metabolic process 3.16% (3/95) 4.31 0.00048 0.002695
GO:0034660 ncRNA metabolic process 4.21% (4/95) 3.46 0.000502 0.002747
GO:0000097 sulfur amino acid biosynthetic process 2.11% (2/95) 5.87 0.000527 0.002753
GO:0009067 aspartate family amino acid biosynthetic process 2.11% (2/95) 5.87 0.000527 0.002753
GO:0032555 purine ribonucleotide binding 16.84% (16/95) 1.32 0.000592 0.00296
GO:0044283 small molecule biosynthetic process 4.21% (4/95) 3.4 0.000582 0.002974
GO:0032553 ribonucleotide binding 16.84% (16/95) 1.31 0.000635 0.003042
GO:0043168 anion binding 17.89% (17/95) 1.26 0.000629 0.003077
GO:0004222 metalloendopeptidase activity 3.16% (3/95) 4.13 0.000686 0.003091
GO:0097367 carbohydrate derivative binding 16.84% (16/95) 1.31 0.000661 0.003104
GO:0044237 cellular metabolic process 20.0% (19/95) 1.16 0.000679 0.003125
GO:0006396 RNA processing 4.21% (4/95) 3.21 0.000955 0.004222
GO:0003916 DNA topoisomerase activity 2.11% (2/95) 5.36 0.001089 0.004639
GO:0006265 DNA topological change 2.11% (2/95) 5.36 0.001089 0.004639
GO:0008152 metabolic process 25.26% (24/95) 0.93 0.001162 0.004858
GO:0044272 sulfur compound biosynthetic process 2.11% (2/95) 5.09 0.001572 0.006456
GO:0006807 nitrogen compound metabolic process 20.0% (19/95) 1.04 0.00186 0.007375
GO:0008173 RNA methyltransferase activity 2.11% (2/95) 4.98 0.001845 0.007445
GO:0008237 metallopeptidase activity 3.16% (3/95) 3.62 0.001921 0.007488
GO:0140101 catalytic activity, acting on a tRNA 3.16% (3/95) 3.59 0.002032 0.007791
GO:0140097 catalytic activity, acting on DNA 3.16% (3/95) 3.58 0.00209 0.007879
GO:0043167 ion binding 22.11% (21/95) 0.95 0.002192 0.00813
GO:0008033 tRNA processing 2.11% (2/95) 4.77 0.002454 0.008684
GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity 1.05% (1/95) 8.68 0.002442 0.008774
GO:0004455 ketol-acid reductoisomerase activity 1.05% (1/95) 8.68 0.002442 0.008774
GO:0140662 ATP-dependent protein folding chaperone 3.16% (3/95) 3.38 0.003072 0.010705
GO:0044238 primary metabolic process 22.11% (21/95) 0.91 0.003129 0.010743
GO:0005524 ATP binding 12.63% (12/95) 1.3 0.003367 0.011388
GO:0044183 protein folding chaperone 3.16% (3/95) 3.32 0.003452 0.011508
GO:0004175 endopeptidase activity 3.16% (3/95) 3.29 0.003694 0.012137
GO:0005525 GTP binding 4.21% (4/95) 2.64 0.00396 0.012651
GO:0032561 guanyl ribonucleotide binding 4.21% (4/95) 2.64 0.00396 0.012651
GO:0019001 guanyl nucleotide binding 4.21% (4/95) 2.62 0.004234 0.01334
GO:0071704 organic substance metabolic process 22.11% (21/95) 0.85 0.004923 0.013809
GO:0031369 translation initiation factor binding 1.05% (1/95) 7.68 0.004877 0.013849
GO:0004820 glycine-tRNA ligase activity 1.05% (1/95) 7.68 0.004877 0.013849
GO:0004134 4-alpha-glucanotransferase activity 1.05% (1/95) 7.68 0.004877 0.013849
GO:0006426 glycyl-tRNA aminoacylation 1.05% (1/95) 7.68 0.004877 0.013849
GO:0009082 branched-chain amino acid biosynthetic process 1.05% (1/95) 7.68 0.004877 0.013849
GO:0009081 branched-chain amino acid metabolic process 1.05% (1/95) 7.68 0.004877 0.013849
GO:0071103 DNA conformation change 2.11% (2/95) 4.32 0.004546 0.01413
GO:0006457 protein folding 2.11% (2/95) 4.29 0.004766 0.014615
GO:0006259 DNA metabolic process 3.16% (3/95) 3.03 0.005999 0.016426
GO:0016887 ATP hydrolysis activity 3.16% (3/95) 3.03 0.005999 0.016426
GO:1901607 alpha-amino acid biosynthetic process 2.11% (2/95) 4.09 0.006185 0.016735
GO:0016853 isomerase activity 3.16% (3/95) 2.97 0.006801 0.018189
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 1.05% (1/95) 7.09 0.007307 0.019317
GO:0030554 adenyl nucleotide binding 13.68% (13/95) 1.09 0.007786 0.02012
GO:0009451 RNA modification 2.11% (2/95) 3.92 0.007772 0.020313
GO:0051276 chromosome organization 2.11% (2/95) 3.8 0.00922 0.023561
GO:0004832 valine-tRNA ligase activity 1.05% (1/95) 6.68 0.009731 0.024327
GO:0006438 valyl-tRNA aminoacylation 1.05% (1/95) 6.68 0.009731 0.024327
GO:0008094 ATP-dependent activity, acting on DNA 2.11% (2/95) 3.72 0.010141 0.025081
GO:0016423 tRNA (guanine) methyltransferase activity 1.05% (1/95) 6.36 0.012149 0.029726
GO:0032559 adenyl ribonucleotide binding 12.63% (12/95) 1.06 0.012369 0.029946
GO:0034470 ncRNA processing 2.11% (2/95) 3.53 0.013139 0.03148
GO:0003674 molecular_function 48.42% (46/95) 0.39 0.013567 0.03217
GO:0006418 tRNA aminoacylation for protein translation 2.11% (2/95) 3.47 0.014214 0.03336
GO:0008175 tRNA methyltransferase activity 1.05% (1/95) 6.09 0.014561 0.033829
GO:1901566 organonitrogen compound biosynthetic process 5.26% (5/95) 1.78 0.015768 0.034871
GO:0043039 tRNA aminoacylation 2.11% (2/95) 3.39 0.015704 0.035068
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.11% (2/95) 3.39 0.015704 0.035068
GO:0004812 aminoacyl-tRNA ligase activity 2.11% (2/95) 3.39 0.015704 0.035068
GO:0043038 amino acid activation 2.11% (2/95) 3.39 0.015704 0.035068
GO:0009987 cellular process 22.11% (21/95) 0.67 0.019651 0.043044
GO:0006996 organelle organization 2.11% (2/95) 3.12 0.022291 0.048368
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_184 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_241 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_265 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_269 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_14 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_72 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_86 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_99 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_158 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_190 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_211 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_95 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_114 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_172 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (95) (download table)

InterPro Domains

GO Terms

Family Terms