ID | Label | % in cluster | Enrichment log2 | p-value | Corrected p-value |
---|---|---|---|---|---|
GO:0006555 | methionine metabolic process | 3.16% (3/95) | 7.94 | 0.0 | 3.2e-05 |
GO:0006520 | amino acid metabolic process | 7.37% (7/95) | 3.98 | 0.0 | 3.9e-05 |
GO:0090304 | nucleic acid metabolic process | 10.53% (10/95) | 2.77 | 2e-06 | 0.000166 |
GO:0097159 | organic cyclic compound binding | 31.58% (30/95) | 1.2 | 7e-06 | 0.000221 |
GO:1901363 | heterocyclic compound binding | 31.58% (30/95) | 1.2 | 7e-06 | 0.000221 |
GO:0140640 | catalytic activity, acting on a nucleic acid | 8.42% (8/95) | 3.09 | 5e-06 | 0.000277 |
GO:0009066 | aspartate family amino acid metabolic process | 3.16% (3/95) | 6.36 | 6e-06 | 0.000289 |
GO:0000096 | sulfur amino acid metabolic process | 3.16% (3/95) | 5.87 | 1.8e-05 | 0.000321 |
GO:0004176 | ATP-dependent peptidase activity | 3.16% (3/95) | 5.87 | 1.8e-05 | 0.000321 |
GO:0006082 | organic acid metabolic process | 7.37% (7/95) | 3.15 | 1.5e-05 | 0.000339 |
GO:0019752 | carboxylic acid metabolic process | 7.37% (7/95) | 3.16 | 1.4e-05 | 0.00037 |
GO:0043436 | oxoacid metabolic process | 7.37% (7/95) | 3.16 | 1.4e-05 | 0.00037 |
GO:0006139 | nucleobase-containing compound metabolic process | 10.53% (10/95) | 2.42 | 1.8e-05 | 0.000374 |
GO:0140657 | ATP-dependent activity | 8.42% (8/95) | 2.73 | 2.9e-05 | 0.000478 |
GO:0046483 | heterocycle metabolic process | 10.53% (10/95) | 2.29 | 3.8e-05 | 0.00049 |
GO:0003723 | RNA binding | 9.47% (9/95) | 2.47 | 3.7e-05 | 0.000507 |
GO:0006725 | cellular aromatic compound metabolic process | 10.53% (10/95) | 2.3 | 3.7e-05 | 0.00053 |
GO:0009086 | methionine biosynthetic process | 2.11% (2/95) | 7.68 | 3.5e-05 | 0.000541 |
GO:1901360 | organic cyclic compound metabolic process | 10.53% (10/95) | 2.24 | 5.3e-05 | 0.000636 |
GO:1901265 | nucleoside phosphate binding | 20.0% (19/95) | 1.43 | 6.4e-05 | 0.000698 |
GO:0000166 | nucleotide binding | 20.0% (19/95) | 1.43 | 6.4e-05 | 0.000698 |
GO:0008172 | S-methyltransferase activity | 2.11% (2/95) | 7.09 | 8.8e-05 | 0.000843 |
GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | 2.11% (2/95) | 7.09 | 8.8e-05 | 0.000843 |
GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | 2.11% (2/95) | 7.09 | 8.8e-05 | 0.000843 |
GO:0036094 | small molecule binding | 20.0% (19/95) | 1.38 | 0.0001 | 0.000921 |
GO:0035639 | purine ribonucleoside triphosphate binding | 16.84% (16/95) | 1.54 | 0.000109 | 0.000962 |
GO:0016070 | RNA metabolic process | 7.37% (7/95) | 2.67 | 0.000122 | 0.001036 |
GO:0006790 | sulfur compound metabolic process | 3.16% (3/95) | 4.87 | 0.000151 | 0.001198 |
GO:0006399 | tRNA metabolic process | 4.21% (4/95) | 3.92 | 0.000147 | 0.001209 |
GO:0034641 | cellular nitrogen compound metabolic process | 11.58% (11/95) | 1.91 | 0.000162 | 0.001243 |
GO:0005488 | binding | 38.95% (37/95) | 0.8 | 0.000205 | 0.001522 |
GO:0008168 | methyltransferase activity | 5.26% (5/95) | 3.17 | 0.00025 | 0.001794 |
GO:0046394 | carboxylic acid biosynthetic process | 4.21% (4/95) | 3.7 | 0.000266 | 0.001798 |
GO:0016053 | organic acid biosynthetic process | 4.21% (4/95) | 3.7 | 0.000266 | 0.001798 |
GO:0016741 | transferase activity, transferring one-carbon groups | 5.26% (5/95) | 3.11 | 0.000304 | 0.001998 |
GO:0140098 | catalytic activity, acting on RNA | 5.26% (5/95) | 3.09 | 0.000316 | 0.002018 |
GO:0044281 | small molecule metabolic process | 7.37% (7/95) | 2.44 | 0.000325 | 0.002022 |
GO:0003676 | nucleic acid binding | 14.74% (14/95) | 1.53 | 0.000335 | 0.002025 |
GO:0017076 | purine nucleotide binding | 17.89% (17/95) | 1.33 | 0.000362 | 0.002137 |
GO:0008652 | amino acid biosynthetic process | 3.16% (3/95) | 4.33 | 0.000458 | 0.002633 |
GO:1901605 | alpha-amino acid metabolic process | 3.16% (3/95) | 4.31 | 0.00048 | 0.002695 |
GO:0034660 | ncRNA metabolic process | 4.21% (4/95) | 3.46 | 0.000502 | 0.002747 |
GO:0000097 | sulfur amino acid biosynthetic process | 2.11% (2/95) | 5.87 | 0.000527 | 0.002753 |
GO:0009067 | aspartate family amino acid biosynthetic process | 2.11% (2/95) | 5.87 | 0.000527 | 0.002753 |
GO:0032555 | purine ribonucleotide binding | 16.84% (16/95) | 1.32 | 0.000592 | 0.00296 |
GO:0044283 | small molecule biosynthetic process | 4.21% (4/95) | 3.4 | 0.000582 | 0.002974 |
GO:0032553 | ribonucleotide binding | 16.84% (16/95) | 1.31 | 0.000635 | 0.003042 |
GO:0043168 | anion binding | 17.89% (17/95) | 1.26 | 0.000629 | 0.003077 |
GO:0004222 | metalloendopeptidase activity | 3.16% (3/95) | 4.13 | 0.000686 | 0.003091 |
GO:0097367 | carbohydrate derivative binding | 16.84% (16/95) | 1.31 | 0.000661 | 0.003104 |
GO:0044237 | cellular metabolic process | 20.0% (19/95) | 1.16 | 0.000679 | 0.003125 |
GO:0006396 | RNA processing | 4.21% (4/95) | 3.21 | 0.000955 | 0.004222 |
GO:0003916 | DNA topoisomerase activity | 2.11% (2/95) | 5.36 | 0.001089 | 0.004639 |
GO:0006265 | DNA topological change | 2.11% (2/95) | 5.36 | 0.001089 | 0.004639 |
GO:0008152 | metabolic process | 25.26% (24/95) | 0.93 | 0.001162 | 0.004858 |
GO:0044272 | sulfur compound biosynthetic process | 2.11% (2/95) | 5.09 | 0.001572 | 0.006456 |
GO:0006807 | nitrogen compound metabolic process | 20.0% (19/95) | 1.04 | 0.00186 | 0.007375 |
GO:0008173 | RNA methyltransferase activity | 2.11% (2/95) | 4.98 | 0.001845 | 0.007445 |
GO:0008237 | metallopeptidase activity | 3.16% (3/95) | 3.62 | 0.001921 | 0.007488 |
GO:0140101 | catalytic activity, acting on a tRNA | 3.16% (3/95) | 3.59 | 0.002032 | 0.007791 |
GO:0140097 | catalytic activity, acting on DNA | 3.16% (3/95) | 3.58 | 0.00209 | 0.007879 |
GO:0043167 | ion binding | 22.11% (21/95) | 0.95 | 0.002192 | 0.00813 |
GO:0008033 | tRNA processing | 2.11% (2/95) | 4.77 | 0.002454 | 0.008684 |
GO:0004489 | methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.05% (1/95) | 8.68 | 0.002442 | 0.008774 |
GO:0004455 | ketol-acid reductoisomerase activity | 1.05% (1/95) | 8.68 | 0.002442 | 0.008774 |
GO:0140662 | ATP-dependent protein folding chaperone | 3.16% (3/95) | 3.38 | 0.003072 | 0.010705 |
GO:0044238 | primary metabolic process | 22.11% (21/95) | 0.91 | 0.003129 | 0.010743 |
GO:0005524 | ATP binding | 12.63% (12/95) | 1.3 | 0.003367 | 0.011388 |
GO:0044183 | protein folding chaperone | 3.16% (3/95) | 3.32 | 0.003452 | 0.011508 |
GO:0004175 | endopeptidase activity | 3.16% (3/95) | 3.29 | 0.003694 | 0.012137 |
GO:0005525 | GTP binding | 4.21% (4/95) | 2.64 | 0.00396 | 0.012651 |
GO:0032561 | guanyl ribonucleotide binding | 4.21% (4/95) | 2.64 | 0.00396 | 0.012651 |
GO:0019001 | guanyl nucleotide binding | 4.21% (4/95) | 2.62 | 0.004234 | 0.01334 |
GO:0071704 | organic substance metabolic process | 22.11% (21/95) | 0.85 | 0.004923 | 0.013809 |
GO:0031369 | translation initiation factor binding | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0004820 | glycine-tRNA ligase activity | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0004134 | 4-alpha-glucanotransferase activity | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0006426 | glycyl-tRNA aminoacylation | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0009082 | branched-chain amino acid biosynthetic process | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0009081 | branched-chain amino acid metabolic process | 1.05% (1/95) | 7.68 | 0.004877 | 0.013849 |
GO:0071103 | DNA conformation change | 2.11% (2/95) | 4.32 | 0.004546 | 0.01413 |
GO:0006457 | protein folding | 2.11% (2/95) | 4.29 | 0.004766 | 0.014615 |
GO:0006259 | DNA metabolic process | 3.16% (3/95) | 3.03 | 0.005999 | 0.016426 |
GO:0016887 | ATP hydrolysis activity | 3.16% (3/95) | 3.03 | 0.005999 | 0.016426 |
GO:1901607 | alpha-amino acid biosynthetic process | 2.11% (2/95) | 4.09 | 0.006185 | 0.016735 |
GO:0016853 | isomerase activity | 3.16% (3/95) | 2.97 | 0.006801 | 0.018189 |
GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | 1.05% (1/95) | 7.09 | 0.007307 | 0.019317 |
GO:0030554 | adenyl nucleotide binding | 13.68% (13/95) | 1.09 | 0.007786 | 0.02012 |
GO:0009451 | RNA modification | 2.11% (2/95) | 3.92 | 0.007772 | 0.020313 |
GO:0051276 | chromosome organization | 2.11% (2/95) | 3.8 | 0.00922 | 0.023561 |
GO:0004832 | valine-tRNA ligase activity | 1.05% (1/95) | 6.68 | 0.009731 | 0.024327 |
GO:0006438 | valyl-tRNA aminoacylation | 1.05% (1/95) | 6.68 | 0.009731 | 0.024327 |
GO:0008094 | ATP-dependent activity, acting on DNA | 2.11% (2/95) | 3.72 | 0.010141 | 0.025081 |
GO:0016423 | tRNA (guanine) methyltransferase activity | 1.05% (1/95) | 6.36 | 0.012149 | 0.029726 |
GO:0032559 | adenyl ribonucleotide binding | 12.63% (12/95) | 1.06 | 0.012369 | 0.029946 |
GO:0034470 | ncRNA processing | 2.11% (2/95) | 3.53 | 0.013139 | 0.03148 |
GO:0003674 | molecular_function | 48.42% (46/95) | 0.39 | 0.013567 | 0.03217 |
GO:0006418 | tRNA aminoacylation for protein translation | 2.11% (2/95) | 3.47 | 0.014214 | 0.03336 |
GO:0008175 | tRNA methyltransferase activity | 1.05% (1/95) | 6.09 | 0.014561 | 0.033829 |
GO:1901566 | organonitrogen compound biosynthetic process | 5.26% (5/95) | 1.78 | 0.015768 | 0.034871 |
GO:0043039 | tRNA aminoacylation | 2.11% (2/95) | 3.39 | 0.015704 | 0.035068 |
GO:0016875 | ligase activity, forming carbon-oxygen bonds | 2.11% (2/95) | 3.39 | 0.015704 | 0.035068 |
GO:0004812 | aminoacyl-tRNA ligase activity | 2.11% (2/95) | 3.39 | 0.015704 | 0.035068 |
GO:0043038 | amino acid activation | 2.11% (2/95) | 3.39 | 0.015704 | 0.035068 |
GO:0009987 | cellular process | 22.11% (21/95) | 0.67 | 0.019651 | 0.043044 |
GO:0006996 | organelle organization | 2.11% (2/95) | 3.12 | 0.022291 | 0.048368 |
Clade | % in cluster | Enrichment log2 | p-value | Corrected p-value | Gene Family Method |
---|---|---|---|---|---|
No enriched Clades found |
Species | Clustering Method | Target | Jaccard index | Gene Family Method (for comparison) | Actions |
---|---|---|---|---|---|
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_93 | 0.016 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_130 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_138 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_184 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_201 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_241 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_265 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_269 | 0.013 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_14 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_46 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_47 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_72 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_86 | 0.013 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_92 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_94 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_99 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_105 | 0.013 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_121 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_145 | 0.013 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_158 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_179 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_190 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_211 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_237 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_15 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_95 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_114 | 0.017 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_130 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_137 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_162 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_172 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |