Coexpression cluster: Cluster_20 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043226 organelle 57.04% (77/135) 4.7 0.0 0.0
GO:0043170 macromolecule metabolic process 59.26% (80/135) 2.71 0.0 0.0
GO:0043228 non-membrane-bounded organelle 57.04% (77/135) 5.52 0.0 0.0
GO:0043229 intracellular organelle 57.04% (77/135) 4.7 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 57.04% (77/135) 5.52 0.0 0.0
GO:0043603 amide metabolic process 57.78% (78/135) 5.55 0.0 0.0
GO:0043604 amide biosynthetic process 57.78% (78/135) 5.63 0.0 0.0
GO:0044237 cellular metabolic process 59.26% (80/135) 2.7 0.0 0.0
GO:0044249 cellular biosynthetic process 57.78% (78/135) 4.43 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 57.78% (78/135) 4.86 0.0 0.0
GO:0110165 cellular anatomical entity 57.78% (78/135) 2.9 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 57.78% (78/135) 2.8 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 57.78% (78/135) 5.06 0.0 0.0
GO:1901576 organic substance biosynthetic process 57.78% (78/135) 4.28 0.0 0.0
GO:0043043 peptide biosynthetic process 57.78% (78/135) 5.65 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 59.26% (80/135) 4.15 0.0 0.0
GO:0006518 peptide metabolic process 57.78% (78/135) 5.59 0.0 0.0
GO:0005840 ribosome 57.04% (77/135) 5.7 0.0 0.0
GO:0005575 cellular_component 60.0% (81/135) 2.7 0.0 0.0
GO:0009058 biosynthetic process 57.78% (78/135) 4.1 0.0 0.0
GO:0009059 macromolecule biosynthetic process 57.78% (78/135) 5.05 0.0 0.0
GO:0005198 structural molecule activity 57.78% (78/135) 5.5 0.0 0.0
GO:0003735 structural constituent of ribosome 57.78% (78/135) 5.66 0.0 0.0
GO:0019538 protein metabolic process 57.78% (78/135) 3.01 0.0 0.0
GO:0006412 translation 57.78% (78/135) 5.68 0.0 0.0
GO:0006807 nitrogen compound metabolic process 59.26% (80/135) 2.59 0.0 0.0
GO:0044238 primary metabolic process 59.26% (80/135) 2.28 0.0 0.0
GO:0071704 organic substance metabolic process 59.26% (80/135) 2.22 0.0 0.0
GO:0008152 metabolic process 59.26% (80/135) 2.11 0.0 0.0
GO:0009987 cellular process 59.26% (80/135) 2.01 0.0 0.0
GO:0008150 biological_process 60.0% (81/135) 1.32 0.0 0.0
GO:0019843 rRNA binding 5.19% (7/135) 5.73 0.0 0.0
GO:0003674 molecular_function 68.15% (92/135) 0.73 0.0 0.0
GO:0003723 RNA binding 10.37% (14/135) 2.44 0.0 1e-06
GO:0008097 5S rRNA binding 1.48% (2/135) 6.92 0.000107 0.000417
GO:0030684 preribosome 1.48% (2/135) 5.78 0.000583 0.002203
GO:1990904 ribonucleoprotein complex 2.22% (3/135) 3.95 0.000998 0.00367
GO:0003676 nucleic acid binding 13.33% (18/135) 1.03 0.003044 0.010894
GO:0030688 preribosome, small subunit precursor 0.74% (1/135) 7.24 0.00659 0.02298
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.269 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_54 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.061 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_107 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.041 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.111 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_286 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_388 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.158 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.024 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.139 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.037 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.062 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_169 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (135) (download table)

InterPro Domains

GO Terms

Family Terms