Coexpression cluster: Cluster_47 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006364 rRNA processing 9.15% (13/142) 6.48 0.0 0.0
GO:0016072 rRNA metabolic process 9.15% (13/142) 6.48 0.0 0.0
GO:0034660 ncRNA metabolic process 11.27% (16/142) 4.88 0.0 0.0
GO:0034470 ncRNA processing 9.15% (13/142) 5.65 0.0 0.0
GO:0003676 nucleic acid binding 23.94% (34/142) 2.23 0.0 0.0
GO:0006396 RNA processing 9.15% (13/142) 4.33 0.0 0.0
GO:0016070 RNA metabolic process 11.97% (17/142) 3.37 0.0 0.0
GO:0003723 RNA binding 12.68% (18/142) 2.89 0.0 0.0
GO:0090304 nucleic acid metabolic process 11.97% (17/142) 2.96 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 16.2% (23/142) 2.4 0.0 0.0
GO:0042254 ribosome biogenesis 3.52% (5/142) 6.96 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 3.52% (5/142) 6.84 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 12.68% (18/142) 2.69 0.0 0.0
GO:0005488 binding 45.77% (65/142) 1.03 0.0 0.0
GO:0044085 cellular component biogenesis 3.52% (5/142) 6.72 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 12.68% (18/142) 2.57 0.0 0.0
GO:0046483 heterocycle metabolic process 12.68% (18/142) 2.56 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 12.68% (18/142) 2.51 0.0 0.0
GO:1901363 heterocyclic compound binding 32.39% (46/142) 1.23 0.0 0.0
GO:0097159 organic cyclic compound binding 32.39% (46/142) 1.23 0.0 0.0
GO:0019843 rRNA binding 3.52% (5/142) 5.51 0.0 1e-06
GO:0043229 intracellular organelle 9.86% (14/142) 2.48 0.0 3e-06
GO:0043226 organelle 9.86% (14/142) 2.48 0.0 3e-06
GO:0008135 translation factor activity, RNA binding 4.23% (6/142) 4.36 1e-06 5e-06
GO:0090079 translation regulator activity, nucleic acid binding 4.23% (6/142) 4.36 1e-06 5e-06
GO:0045182 translation regulator activity 4.23% (6/142) 4.36 1e-06 5e-06
GO:0032040 small-subunit processome 2.11% (3/142) 6.88 2e-06 1.4e-05
GO:0030684 preribosome 2.11% (3/142) 6.51 4e-06 3.3e-05
GO:0003674 molecular_function 54.93% (78/142) 0.58 8e-06 6.8e-05
GO:0005515 protein binding 16.9% (24/142) 1.34 2.3e-05 0.000176
GO:0035639 purine ribonucleoside triphosphate binding 15.49% (22/142) 1.42 2.4e-05 0.000181
GO:0005634 nucleus 4.93% (7/142) 3.04 2.5e-05 0.000185
GO:0003743 translation initiation factor activity 2.82% (4/142) 4.43 3.7e-05 0.000264
GO:0005525 GTP binding 4.93% (7/142) 2.87 5.3e-05 0.000355
GO:0032561 guanyl ribonucleotide binding 4.93% (7/142) 2.87 5.3e-05 0.000355
GO:0019001 guanyl nucleotide binding 4.93% (7/142) 2.84 6e-05 0.000389
GO:0043227 membrane-bounded organelle 4.93% (7/142) 2.79 7.5e-05 0.000464
GO:0043231 intracellular membrane-bounded organelle 4.93% (7/142) 2.79 7.5e-05 0.000464
GO:0032553 ribonucleotide binding 16.2% (23/142) 1.25 8.7e-05 0.000525
GO:0097367 carbohydrate derivative binding 16.2% (23/142) 1.25 9.3e-05 0.000542
GO:0071840 cellular component organization or biogenesis 4.93% (7/142) 2.6 0.00017 0.000971
GO:0032555 purine ribonucleotide binding 15.49% (22/142) 1.2 0.000217 0.001211
GO:0005730 nucleolus 1.41% (2/142) 6.29 0.000274 0.001338
GO:0003747 translation release factor activity 1.41% (2/142) 6.29 0.000274 0.001338
GO:0032984 protein-containing complex disassembly 1.41% (2/142) 6.29 0.000274 0.001338
GO:0008079 translation termination factor activity 1.41% (2/142) 6.29 0.000274 0.001338
GO:0006415 translational termination 1.41% (2/142) 6.29 0.000274 0.001338
GO:0022411 cellular component disassembly 1.41% (2/142) 6.29 0.000274 0.001338
GO:1901265 nucleoside phosphate binding 16.2% (23/142) 1.12 0.000334 0.001561
GO:0000166 nucleotide binding 16.2% (23/142) 1.12 0.000334 0.001561
GO:0043168 anion binding 16.2% (23/142) 1.12 0.000354 0.001623
GO:1990904 ribonucleoprotein complex 2.11% (3/142) 4.4 0.000395 0.001777
GO:0017076 purine nucleotide binding 15.49% (22/142) 1.12 0.000458 0.002022
GO:0036094 small molecule binding 16.2% (23/142) 1.07 0.000537 0.002326
GO:0043228 non-membrane-bounded organelle 4.93% (7/142) 2.22 0.000817 0.003298
GO:0043232 intracellular non-membrane-bounded organelle 4.93% (7/142) 2.22 0.000817 0.003298
GO:0043170 macromolecule metabolic process 17.61% (25/142) 0.98 0.00081 0.003383
GO:0044237 cellular metabolic process 17.61% (25/142) 0.98 0.000806 0.00343
GO:0005852 eukaryotic translation initiation factor 3 complex 1.41% (2/142) 5.29 0.001169 0.004638
GO:0006807 nitrogen compound metabolic process 18.31% (26/142) 0.91 0.001222 0.004767
GO:0008168 methyltransferase activity 3.52% (5/142) 2.59 0.001546 0.00593
GO:0009987 cellular process 23.24% (33/142) 0.74 0.001834 0.006922
GO:0016741 transferase activity, transferring one-carbon groups 3.52% (5/142) 2.53 0.001865 0.006926
GO:0006418 tRNA aminoacylation for protein translation 2.11% (3/142) 3.47 0.002552 0.009332
GO:0004812 aminoacyl-tRNA ligase activity 2.11% (3/142) 3.4 0.002964 0.010199
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.11% (3/142) 3.4 0.002964 0.010199
GO:0043039 tRNA aminoacylation 2.11% (3/142) 3.4 0.002964 0.010199
GO:0043038 amino acid activation 2.11% (3/142) 3.4 0.002964 0.010199
GO:0006420 arginyl-tRNA aminoacylation 0.7% (1/142) 8.1 0.003649 0.012028
GO:0004814 arginine-tRNA ligase activity 0.7% (1/142) 8.1 0.003649 0.012028
GO:0070037 rRNA (pseudouridine) methyltransferase activity 0.7% (1/142) 8.1 0.003649 0.012028
GO:0005575 cellular_component 14.79% (21/142) 0.91 0.003851 0.012515
GO:0006413 translational initiation 1.41% (2/142) 4.1 0.006105 0.019571
GO:0005524 ATP binding 10.56% (15/142) 1.04 0.00634 0.019781
GO:0140101 catalytic activity, acting on a tRNA 2.11% (3/142) 3.01 0.006278 0.019852
GO:0006399 tRNA metabolic process 2.11% (3/142) 2.93 0.007347 0.021491
GO:0031369 translation initiation factor binding 0.7% (1/142) 7.1 0.007286 0.02158
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 0.7% (1/142) 7.1 0.007286 0.02158
GO:0030490 maturation of SSU-rRNA 0.7% (1/142) 7.1 0.007286 0.02158
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.7% (1/142) 7.1 0.007286 0.02158
GO:0005840 ribosome 3.52% (5/142) 1.96 0.009526 0.027185
GO:0032259 methylation 1.41% (2/142) 3.78 0.00942 0.027214
GO:0006412 translation 3.52% (5/142) 1.92 0.010662 0.030059
GO:0043043 peptide biosynthetic process 3.52% (5/142) 1.9 0.011386 0.030277
GO:0016817 hydrolase activity, acting on acid anhydrides 3.52% (5/142) 1.9 0.011263 0.030294
GO:0003735 structural constituent of ribosome 3.52% (5/142) 1.91 0.01102 0.030337
GO:0001671 ATPase activator activity 0.7% (1/142) 6.51 0.010909 0.030389
GO:0110165 cellular anatomical entity 11.97% (17/142) 0.88 0.011211 0.030504
GO:0043604 amide biosynthetic process 3.52% (5/142) 1.88 0.012015 0.030895
GO:0005737 cytoplasm 2.11% (3/142) 2.67 0.011902 0.030945
GO:0140098 catalytic activity, acting on RNA 2.82% (4/142) 2.19 0.011817 0.031069
GO:0016874 ligase activity 2.11% (3/142) 2.59 0.01398 0.035556
GO:0030515 snoRNA binding 0.7% (1/142) 6.1 0.014519 0.035762
GO:0004832 valine-tRNA ligase activity 0.7% (1/142) 6.1 0.014519 0.035762
GO:0006438 valyl-tRNA aminoacylation 0.7% (1/142) 6.1 0.014519 0.035762
GO:0044238 primary metabolic process 18.31% (26/142) 0.64 0.014866 0.036237
GO:0006518 peptide metabolic process 3.52% (5/142) 1.79 0.015361 0.037056
GO:0009451 RNA modification 1.41% (2/142) 3.34 0.016718 0.039919
GO:0043603 amide metabolic process 3.52% (5/142) 1.75 0.017246 0.040764
GO:0008097 5S rRNA binding 0.7% (1/142) 5.78 0.018115 0.04239
GO:0008152 metabolic process 19.72% (28/142) 0.58 0.019243 0.042884
GO:0016859 cis-trans isomerase activity 1.41% (2/142) 3.24 0.01913 0.043043
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.41% (2/142) 3.24 0.01913 0.043043
GO:0005198 structural molecule activity 3.52% (5/142) 1.71 0.01893 0.043429
GO:0043167 ion binding 17.61% (25/142) 0.62 0.018893 0.043771
GO:0016842 amidine-lyase activity 0.7% (1/142) 5.51 0.021699 0.047902
GO:1901566 organonitrogen compound biosynthetic process 4.23% (6/142) 1.46 0.022839 0.049946
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_14 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_78 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_88 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_132 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_149 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (142) (download table)

InterPro Domains

GO Terms

Family Terms