ID | Label | % in cluster | Enrichment log2 | p-value | Corrected p-value |
---|---|---|---|---|---|
GO:0006364 | rRNA processing | 9.15% (13/142) | 6.48 | 0.0 | 0.0 |
GO:0016072 | rRNA metabolic process | 9.15% (13/142) | 6.48 | 0.0 | 0.0 |
GO:0034660 | ncRNA metabolic process | 11.27% (16/142) | 4.88 | 0.0 | 0.0 |
GO:0034470 | ncRNA processing | 9.15% (13/142) | 5.65 | 0.0 | 0.0 |
GO:0003676 | nucleic acid binding | 23.94% (34/142) | 2.23 | 0.0 | 0.0 |
GO:0006396 | RNA processing | 9.15% (13/142) | 4.33 | 0.0 | 0.0 |
GO:0016070 | RNA metabolic process | 11.97% (17/142) | 3.37 | 0.0 | 0.0 |
GO:0003723 | RNA binding | 12.68% (18/142) | 2.89 | 0.0 | 0.0 |
GO:0090304 | nucleic acid metabolic process | 11.97% (17/142) | 2.96 | 0.0 | 0.0 |
GO:0034641 | cellular nitrogen compound metabolic process | 16.2% (23/142) | 2.4 | 0.0 | 0.0 |
GO:0042254 | ribosome biogenesis | 3.52% (5/142) | 6.96 | 0.0 | 0.0 |
GO:0022613 | ribonucleoprotein complex biogenesis | 3.52% (5/142) | 6.84 | 0.0 | 0.0 |
GO:0006139 | nucleobase-containing compound metabolic process | 12.68% (18/142) | 2.69 | 0.0 | 0.0 |
GO:0005488 | binding | 45.77% (65/142) | 1.03 | 0.0 | 0.0 |
GO:0044085 | cellular component biogenesis | 3.52% (5/142) | 6.72 | 0.0 | 0.0 |
GO:0006725 | cellular aromatic compound metabolic process | 12.68% (18/142) | 2.57 | 0.0 | 0.0 |
GO:0046483 | heterocycle metabolic process | 12.68% (18/142) | 2.56 | 0.0 | 0.0 |
GO:1901360 | organic cyclic compound metabolic process | 12.68% (18/142) | 2.51 | 0.0 | 0.0 |
GO:1901363 | heterocyclic compound binding | 32.39% (46/142) | 1.23 | 0.0 | 0.0 |
GO:0097159 | organic cyclic compound binding | 32.39% (46/142) | 1.23 | 0.0 | 0.0 |
GO:0019843 | rRNA binding | 3.52% (5/142) | 5.51 | 0.0 | 1e-06 |
GO:0043229 | intracellular organelle | 9.86% (14/142) | 2.48 | 0.0 | 3e-06 |
GO:0043226 | organelle | 9.86% (14/142) | 2.48 | 0.0 | 3e-06 |
GO:0008135 | translation factor activity, RNA binding | 4.23% (6/142) | 4.36 | 1e-06 | 5e-06 |
GO:0090079 | translation regulator activity, nucleic acid binding | 4.23% (6/142) | 4.36 | 1e-06 | 5e-06 |
GO:0045182 | translation regulator activity | 4.23% (6/142) | 4.36 | 1e-06 | 5e-06 |
GO:0032040 | small-subunit processome | 2.11% (3/142) | 6.88 | 2e-06 | 1.4e-05 |
GO:0030684 | preribosome | 2.11% (3/142) | 6.51 | 4e-06 | 3.3e-05 |
GO:0003674 | molecular_function | 54.93% (78/142) | 0.58 | 8e-06 | 6.8e-05 |
GO:0005515 | protein binding | 16.9% (24/142) | 1.34 | 2.3e-05 | 0.000176 |
GO:0035639 | purine ribonucleoside triphosphate binding | 15.49% (22/142) | 1.42 | 2.4e-05 | 0.000181 |
GO:0005634 | nucleus | 4.93% (7/142) | 3.04 | 2.5e-05 | 0.000185 |
GO:0003743 | translation initiation factor activity | 2.82% (4/142) | 4.43 | 3.7e-05 | 0.000264 |
GO:0005525 | GTP binding | 4.93% (7/142) | 2.87 | 5.3e-05 | 0.000355 |
GO:0032561 | guanyl ribonucleotide binding | 4.93% (7/142) | 2.87 | 5.3e-05 | 0.000355 |
GO:0019001 | guanyl nucleotide binding | 4.93% (7/142) | 2.84 | 6e-05 | 0.000389 |
GO:0043227 | membrane-bounded organelle | 4.93% (7/142) | 2.79 | 7.5e-05 | 0.000464 |
GO:0043231 | intracellular membrane-bounded organelle | 4.93% (7/142) | 2.79 | 7.5e-05 | 0.000464 |
GO:0032553 | ribonucleotide binding | 16.2% (23/142) | 1.25 | 8.7e-05 | 0.000525 |
GO:0097367 | carbohydrate derivative binding | 16.2% (23/142) | 1.25 | 9.3e-05 | 0.000542 |
GO:0071840 | cellular component organization or biogenesis | 4.93% (7/142) | 2.6 | 0.00017 | 0.000971 |
GO:0032555 | purine ribonucleotide binding | 15.49% (22/142) | 1.2 | 0.000217 | 0.001211 |
GO:0005730 | nucleolus | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:0003747 | translation release factor activity | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:0032984 | protein-containing complex disassembly | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:0008079 | translation termination factor activity | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:0006415 | translational termination | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:0022411 | cellular component disassembly | 1.41% (2/142) | 6.29 | 0.000274 | 0.001338 |
GO:1901265 | nucleoside phosphate binding | 16.2% (23/142) | 1.12 | 0.000334 | 0.001561 |
GO:0000166 | nucleotide binding | 16.2% (23/142) | 1.12 | 0.000334 | 0.001561 |
GO:0043168 | anion binding | 16.2% (23/142) | 1.12 | 0.000354 | 0.001623 |
GO:1990904 | ribonucleoprotein complex | 2.11% (3/142) | 4.4 | 0.000395 | 0.001777 |
GO:0017076 | purine nucleotide binding | 15.49% (22/142) | 1.12 | 0.000458 | 0.002022 |
GO:0036094 | small molecule binding | 16.2% (23/142) | 1.07 | 0.000537 | 0.002326 |
GO:0043228 | non-membrane-bounded organelle | 4.93% (7/142) | 2.22 | 0.000817 | 0.003298 |
GO:0043232 | intracellular non-membrane-bounded organelle | 4.93% (7/142) | 2.22 | 0.000817 | 0.003298 |
GO:0043170 | macromolecule metabolic process | 17.61% (25/142) | 0.98 | 0.00081 | 0.003383 |
GO:0044237 | cellular metabolic process | 17.61% (25/142) | 0.98 | 0.000806 | 0.00343 |
GO:0005852 | eukaryotic translation initiation factor 3 complex | 1.41% (2/142) | 5.29 | 0.001169 | 0.004638 |
GO:0006807 | nitrogen compound metabolic process | 18.31% (26/142) | 0.91 | 0.001222 | 0.004767 |
GO:0008168 | methyltransferase activity | 3.52% (5/142) | 2.59 | 0.001546 | 0.00593 |
GO:0009987 | cellular process | 23.24% (33/142) | 0.74 | 0.001834 | 0.006922 |
GO:0016741 | transferase activity, transferring one-carbon groups | 3.52% (5/142) | 2.53 | 0.001865 | 0.006926 |
GO:0006418 | tRNA aminoacylation for protein translation | 2.11% (3/142) | 3.47 | 0.002552 | 0.009332 |
GO:0004812 | aminoacyl-tRNA ligase activity | 2.11% (3/142) | 3.4 | 0.002964 | 0.010199 |
GO:0016875 | ligase activity, forming carbon-oxygen bonds | 2.11% (3/142) | 3.4 | 0.002964 | 0.010199 |
GO:0043039 | tRNA aminoacylation | 2.11% (3/142) | 3.4 | 0.002964 | 0.010199 |
GO:0043038 | amino acid activation | 2.11% (3/142) | 3.4 | 0.002964 | 0.010199 |
GO:0006420 | arginyl-tRNA aminoacylation | 0.7% (1/142) | 8.1 | 0.003649 | 0.012028 |
GO:0004814 | arginine-tRNA ligase activity | 0.7% (1/142) | 8.1 | 0.003649 | 0.012028 |
GO:0070037 | rRNA (pseudouridine) methyltransferase activity | 0.7% (1/142) | 8.1 | 0.003649 | 0.012028 |
GO:0005575 | cellular_component | 14.79% (21/142) | 0.91 | 0.003851 | 0.012515 |
GO:0006413 | translational initiation | 1.41% (2/142) | 4.1 | 0.006105 | 0.019571 |
GO:0005524 | ATP binding | 10.56% (15/142) | 1.04 | 0.00634 | 0.019781 |
GO:0140101 | catalytic activity, acting on a tRNA | 2.11% (3/142) | 3.01 | 0.006278 | 0.019852 |
GO:0006399 | tRNA metabolic process | 2.11% (3/142) | 2.93 | 0.007347 | 0.021491 |
GO:0031369 | translation initiation factor binding | 0.7% (1/142) | 7.1 | 0.007286 | 0.02158 |
GO:0004018 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | 0.7% (1/142) | 7.1 | 0.007286 | 0.02158 |
GO:0030490 | maturation of SSU-rRNA | 0.7% (1/142) | 7.1 | 0.007286 | 0.02158 |
GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.7% (1/142) | 7.1 | 0.007286 | 0.02158 |
GO:0005840 | ribosome | 3.52% (5/142) | 1.96 | 0.009526 | 0.027185 |
GO:0032259 | methylation | 1.41% (2/142) | 3.78 | 0.00942 | 0.027214 |
GO:0006412 | translation | 3.52% (5/142) | 1.92 | 0.010662 | 0.030059 |
GO:0043043 | peptide biosynthetic process | 3.52% (5/142) | 1.9 | 0.011386 | 0.030277 |
GO:0016817 | hydrolase activity, acting on acid anhydrides | 3.52% (5/142) | 1.9 | 0.011263 | 0.030294 |
GO:0003735 | structural constituent of ribosome | 3.52% (5/142) | 1.91 | 0.01102 | 0.030337 |
GO:0001671 | ATPase activator activity | 0.7% (1/142) | 6.51 | 0.010909 | 0.030389 |
GO:0110165 | cellular anatomical entity | 11.97% (17/142) | 0.88 | 0.011211 | 0.030504 |
GO:0043604 | amide biosynthetic process | 3.52% (5/142) | 1.88 | 0.012015 | 0.030895 |
GO:0005737 | cytoplasm | 2.11% (3/142) | 2.67 | 0.011902 | 0.030945 |
GO:0140098 | catalytic activity, acting on RNA | 2.82% (4/142) | 2.19 | 0.011817 | 0.031069 |
GO:0016874 | ligase activity | 2.11% (3/142) | 2.59 | 0.01398 | 0.035556 |
GO:0030515 | snoRNA binding | 0.7% (1/142) | 6.1 | 0.014519 | 0.035762 |
GO:0004832 | valine-tRNA ligase activity | 0.7% (1/142) | 6.1 | 0.014519 | 0.035762 |
GO:0006438 | valyl-tRNA aminoacylation | 0.7% (1/142) | 6.1 | 0.014519 | 0.035762 |
GO:0044238 | primary metabolic process | 18.31% (26/142) | 0.64 | 0.014866 | 0.036237 |
GO:0006518 | peptide metabolic process | 3.52% (5/142) | 1.79 | 0.015361 | 0.037056 |
GO:0009451 | RNA modification | 1.41% (2/142) | 3.34 | 0.016718 | 0.039919 |
GO:0043603 | amide metabolic process | 3.52% (5/142) | 1.75 | 0.017246 | 0.040764 |
GO:0008097 | 5S rRNA binding | 0.7% (1/142) | 5.78 | 0.018115 | 0.04239 |
GO:0008152 | metabolic process | 19.72% (28/142) | 0.58 | 0.019243 | 0.042884 |
GO:0016859 | cis-trans isomerase activity | 1.41% (2/142) | 3.24 | 0.01913 | 0.043043 |
GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | 1.41% (2/142) | 3.24 | 0.01913 | 0.043043 |
GO:0005198 | structural molecule activity | 3.52% (5/142) | 1.71 | 0.01893 | 0.043429 |
GO:0043167 | ion binding | 17.61% (25/142) | 0.62 | 0.018893 | 0.043771 |
GO:0016842 | amidine-lyase activity | 0.7% (1/142) | 5.51 | 0.021699 | 0.047902 |
GO:1901566 | organonitrogen compound biosynthetic process | 4.23% (6/142) | 1.46 | 0.022839 | 0.049946 |
Clade | % in cluster | Enrichment log2 | p-value | Corrected p-value | Gene Family Method |
---|---|---|---|---|---|
No enriched Clades found |
Species | Clustering Method | Target | Jaccard index | Gene Family Method (for comparison) | Actions |
---|---|---|---|---|---|
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_20 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_94 | 0.012 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_9 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_10 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_14 | 0.014 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_28 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_39 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_45 | 0.012 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_56 | 0.017 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_57 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_78 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_80 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_88 | 0.016 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_94 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_105 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_132 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_134 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_149 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_150 | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_179 | 0.015 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_192 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_207 | 0.019 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_254 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_63 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_116 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_146 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |