Coexpression cluster: Cluster_116 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0019222 regulation of metabolic process 14.47% (11/76) 2.04 6.9e-05 0.001122
GO:0031323 regulation of cellular metabolic process 14.47% (11/76) 2.04 6.8e-05 0.001193
GO:0051171 regulation of nitrogen compound metabolic process 14.47% (11/76) 2.06 6e-05 0.001271
GO:0080090 regulation of primary metabolic process 14.47% (11/76) 2.06 6e-05 0.001271
GO:0060255 regulation of macromolecule metabolic process 14.47% (11/76) 2.05 6.7e-05 0.001285
GO:0009889 regulation of biosynthetic process 14.47% (11/76) 2.09 5.2e-05 0.001381
GO:0010468 regulation of gene expression 14.47% (11/76) 2.09 5.2e-05 0.001381
GO:0010556 regulation of macromolecule biosynthetic process 14.47% (11/76) 2.09 5.2e-05 0.001381
GO:0031326 regulation of cellular biosynthetic process 14.47% (11/76) 2.09 5.2e-05 0.001381
GO:1901363 heterocyclic compound binding 31.58% (24/76) 1.12 0.000129 0.001819
GO:0097159 organic cyclic compound binding 31.58% (24/76) 1.12 0.000129 0.001819
GO:0019219 regulation of nucleobase-containing compound metabolic process 14.47% (11/76) 2.1 4.9e-05 0.002572
GO:0051252 regulation of RNA metabolic process 14.47% (11/76) 2.11 4.6e-05 0.003234
GO:2001141 regulation of RNA biosynthetic process 14.47% (11/76) 2.11 4.5e-05 0.004756
GO:0006355 regulation of DNA-templated transcription 14.47% (11/76) 2.11 4.5e-05 0.004756
GO:0005759 mitochondrial matrix 2.63% (2/76) 5.98 0.000455 0.006
GO:0050789 regulation of biological process 14.47% (11/76) 1.65 0.000702 0.006169
GO:0043233 organelle lumen 2.63% (2/76) 5.82 0.000571 0.006338
GO:0031974 membrane-enclosed lumen 2.63% (2/76) 5.82 0.000571 0.006338
GO:0070013 intracellular organelle lumen 2.63% (2/76) 5.82 0.000571 0.006338
GO:0031420 alkali metal ion binding 2.63% (2/76) 5.68 0.000699 0.006414
GO:0030955 potassium ion binding 2.63% (2/76) 5.68 0.000699 0.006414
GO:0004743 pyruvate kinase activity 2.63% (2/76) 5.68 0.000699 0.006414
GO:0065007 biological regulation 14.47% (11/76) 1.64 0.000769 0.006487
GO:0050794 regulation of cellular process 14.47% (11/76) 1.66 0.000657 0.006931
GO:0003676 nucleic acid binding 17.11% (13/76) 1.39 0.0012 0.00974
GO:0005488 binding 40.79% (31/76) 0.71 0.00173 0.013516
GO:0000313 organellar ribosome 1.32% (1/76) 8.07 0.003713 0.026111
GO:0005761 mitochondrial ribosome 1.32% (1/76) 8.07 0.003713 0.026111
GO:0004329 formate-tetrahydrofolate ligase activity 1.32% (1/76) 8.07 0.003713 0.026111
GO:0003674 molecular_function 56.58% (43/76) 0.46 0.004349 0.029601
GO:0004185 serine-type carboxypeptidase activity 2.63% (2/76) 4.12 0.005994 0.036134
GO:0070008 serine-type exopeptidase activity 2.63% (2/76) 4.12 0.005994 0.036134
GO:0006090 pyruvate metabolic process 2.63% (2/76) 4.12 0.005994 0.036134
GO:0043229 intracellular organelle 7.89% (6/76) 1.84 0.006582 0.036547
GO:0043226 organelle 7.89% (6/76) 1.84 0.006582 0.036547
GO:0003743 translation initiation factor activity 2.63% (2/76) 4.03 0.006766 0.036608
GO:0006096 glycolytic process 2.63% (2/76) 4.17 0.005624 0.037081
GO:0004180 carboxypeptidase activity 2.63% (2/76) 4.07 0.006375 0.037363
GO:0061617 MICOS complex 1.32% (1/76) 7.07 0.007411 0.038142
GO:0003677 DNA binding 10.53% (8/76) 1.5 0.007275 0.038376
GO:0008238 exopeptidase activity 2.63% (2/76) 3.9 0.008005 0.040217
GO:0008150 biological_process 36.84% (28/76) 0.62 0.008418 0.041306
GO:0016052 carbohydrate catabolic process 2.63% (2/76) 3.82 0.008883 0.0426
GO:0035145 exon-exon junction complex 1.32% (1/76) 6.75 0.009256 0.0434
GO:0005840 ribosome 5.26% (4/76) 2.26 0.009875 0.045295
GO:0006412 translation 5.26% (4/76) 2.23 0.010718 0.047114
GO:0009059 macromolecule biosynthetic process 6.58% (5/76) 1.92 0.010554 0.047381
GO:0003735 structural constituent of ribosome 5.26% (4/76) 2.21 0.011197 0.048215
GO:0043043 peptide biosynthetic process 5.26% (4/76) 2.2 0.011524 0.04863
GO:0045182 translation regulator activity 2.63% (2/76) 3.5 0.013605 0.048657
GO:0008135 translation factor activity, RNA binding 2.63% (2/76) 3.5 0.013605 0.048657
GO:0090079 translation regulator activity, nucleic acid binding 2.63% (2/76) 3.5 0.013605 0.048657
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_7 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_31 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_81 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_114 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_161 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_167 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_173 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_195 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_205 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_208 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_236 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_246 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_248 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_253 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_260 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_261 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_272 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_275 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_286 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_66 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_216 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_126 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (76) (download table)

InterPro Domains

GO Terms

Family Terms