Coexpression cluster: Cluster_94 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016072 rRNA metabolic process 12.5% (16/128) 6.49 0.0 0.0
GO:0006364 rRNA processing 12.5% (16/128) 6.49 0.0 0.0
GO:0034470 ncRNA processing 12.5% (16/128) 5.86 0.0 0.0
GO:0034660 ncRNA metabolic process 12.5% (16/128) 4.86 0.0 0.0
GO:0006396 RNA processing 13.28% (17/128) 4.65 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 24.22% (31/128) 2.86 0.0 0.0
GO:0016070 RNA metabolic process 16.41% (21/128) 3.68 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 17.97% (23/128) 3.18 0.0 0.0
GO:0090304 nucleic acid metabolic process 16.41% (21/128) 3.32 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 17.97% (23/128) 3.03 0.0 0.0
GO:0046483 heterocycle metabolic process 17.97% (23/128) 3.03 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 17.97% (23/128) 3.0 0.0 0.0
GO:0003723 RNA binding 15.62% (20/128) 3.03 0.0 0.0
GO:0003676 nucleic acid binding 23.44% (30/128) 1.84 0.0 0.0
GO:0043226 organelle 11.72% (15/128) 2.41 0.0 2e-06
GO:0043229 intracellular organelle 11.72% (15/128) 2.41 0.0 2e-06
GO:0022613 ribonucleoprotein complex biogenesis 3.12% (4/128) 6.15 0.0 4e-06
GO:0005730 nucleolus 2.34% (3/128) 7.58 0.0 4e-06
GO:0044237 cellular metabolic process 24.22% (31/128) 1.41 0.0 4e-06
GO:0006807 nitrogen compound metabolic process 25.0% (32/128) 1.35 1e-06 7e-06
GO:0043232 intracellular non-membrane-bounded organelle 8.59% (11/128) 2.79 1e-06 7e-06
GO:0043228 non-membrane-bounded organelle 8.59% (11/128) 2.79 1e-06 7e-06
GO:0032040 small-subunit processome 2.34% (3/128) 6.74 2e-06 2.7e-05
GO:0043170 macromolecule metabolic process 22.66% (29/128) 1.32 3e-06 3.1e-05
GO:0044085 cellular component biogenesis 3.12% (4/128) 5.15 5e-06 4.7e-05
GO:0030684 preribosome 2.34% (3/128) 6.45 5e-06 4.8e-05
GO:0042254 ribosome biogenesis 2.34% (3/128) 5.82 2e-05 0.00018
GO:1990904 ribonucleoprotein complex 3.12% (4/128) 4.44 3.6e-05 0.000321
GO:0044271 cellular nitrogen compound biosynthetic process 8.59% (11/128) 2.11 5.5e-05 0.000466
GO:1901566 organonitrogen compound biosynthetic process 7.81% (10/128) 2.17 8.2e-05 0.000678
GO:0005840 ribosome 6.25% (8/128) 2.51 9e-05 0.000716
GO:0030515 snoRNA binding 1.56% (2/128) 7.0 9.7e-05 0.000745
GO:0044238 primary metabolic process 24.22% (31/128) 0.99 0.000125 0.000791
GO:0006412 translation 6.25% (8/128) 2.47 0.000106 0.000794
GO:1901363 heterocyclic compound binding 27.34% (35/128) 0.91 0.000123 0.000803
GO:0097159 organic cyclic compound binding 27.34% (35/128) 0.91 0.000123 0.000803
GO:0003735 structural constituent of ribosome 6.25% (8/128) 2.46 0.000116 0.000818
GO:0071704 organic substance metabolic process 25.0% (32/128) 0.98 0.000115 0.000832
GO:0043604 amide biosynthetic process 6.25% (8/128) 2.42 0.000136 0.00084
GO:0043043 peptide biosynthetic process 6.25% (8/128) 2.44 0.000123 0.000844
GO:0009987 cellular process 27.34% (35/128) 0.89 0.000153 0.000921
GO:0006518 peptide metabolic process 6.25% (8/128) 2.38 0.000168 0.000987
GO:0043603 amide metabolic process 6.25% (8/128) 2.34 0.000198 0.001135
GO:0005198 structural molecule activity 6.25% (8/128) 2.29 0.000247 0.001387
GO:0019843 rRNA binding 2.34% (3/128) 4.58 0.000272 0.001491
GO:0005488 binding 39.06% (50/128) 0.65 0.000293 0.001572
GO:0009059 macromolecule biosynthetic process 7.03% (9/128) 2.01 0.000423 0.002223
GO:0008152 metabolic process 25.0% (32/128) 0.86 0.000479 0.002467
GO:0005852 eukaryotic translation initiation factor 3 complex 1.56% (2/128) 5.86 0.000525 0.002644
GO:0044249 cellular biosynthetic process 8.59% (11/128) 1.68 0.000674 0.00333
GO:0009451 RNA modification 2.34% (3/128) 4.02 0.000856 0.004146
GO:1901576 organic substance biosynthetic process 8.59% (11/128) 1.53 0.001605 0.007624
GO:0051020 GTPase binding 1.56% (2/128) 4.57 0.00324 0.013797
GO:0031267 small GTPase binding 1.56% (2/128) 4.57 0.00324 0.013797
GO:0034511 U3 snoRNA binding 0.78% (1/128) 8.32 0.003129 0.013802
GO:0042274 ribosomal small subunit biogenesis 0.78% (1/128) 8.32 0.003129 0.013802
GO:0070037 rRNA (pseudouridine) methyltransferase activity 0.78% (1/128) 8.32 0.003129 0.013802
GO:0001522 pseudouridine synthesis 1.56% (2/128) 4.62 0.003006 0.014009
GO:0009058 biosynthetic process 8.59% (11/128) 1.35 0.004121 0.017251
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.78% (1/128) 7.32 0.006249 0.024116
GO:0030490 maturation of SSU-rRNA 0.78% (1/128) 7.32 0.006249 0.024116
GO:0046037 GMP metabolic process 0.78% (1/128) 7.32 0.006249 0.024116
GO:0006177 GMP biosynthetic process 0.78% (1/128) 7.32 0.006249 0.024116
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.78% (1/128) 7.32 0.006249 0.024116
GO:0005575 cellular_component 16.41% (21/128) 0.83 0.007044 0.026766
GO:0034457 Mpp10 complex 0.78% (1/128) 6.74 0.009358 0.034501
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 0.78% (1/128) 6.74 0.009358 0.034501
GO:0110165 cellular anatomical entity 14.06% (18/128) 0.86 0.00965 0.035053
GO:0032259 methylation 1.56% (2/128) 3.62 0.011632 0.041043
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.56% (2/128) 3.62 0.011632 0.041043
GO:0071840 cellular component organization or biogenesis 3.91% (5/128) 1.85 0.013021 0.045297
GO:0008168 methyltransferase activity 3.12% (4/128) 2.11 0.014394 0.049381
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.055 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.061 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_54 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_184 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.046 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_285 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.028 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.024 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (128) (download table)

InterPro Domains

GO Terms

Family Terms