Coexpression cluster: Cluster_63 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 60.34% (35/58) 1.66 0.0 0.0
GO:0034660 ncRNA metabolic process 12.07% (7/58) 5.13 0.0 0.0
GO:0097159 organic cyclic compound binding 41.38% (24/58) 1.77 0.0 1e-06
GO:1901363 heterocyclic compound binding 41.38% (24/58) 1.77 0.0 1e-06
GO:0003723 RNA binding 15.52% (9/58) 3.68 0.0 1e-06
GO:0003674 molecular_function 65.52% (38/58) 1.15 0.0 1e-06
GO:0003676 nucleic acid binding 31.03% (18/58) 2.14 0.0 1e-06
GO:0016070 RNA metabolic process 12.07% (7/58) 3.59 2e-06 4.5e-05
GO:0034470 ncRNA processing 6.9% (4/58) 5.23 4e-06 7.9e-05
GO:0005515 protein binding 22.41% (13/58) 2.19 4e-06 8.1e-05
GO:0140101 catalytic activity, acting on a tRNA 6.9% (4/58) 4.98 8e-06 0.000142
GO:0043226 organelle 12.07% (7/58) 3.16 1.3e-05 0.000158
GO:0043229 intracellular organelle 12.07% (7/58) 3.16 1.3e-05 0.000158
GO:0035639 purine ribonucleoside triphosphate binding 18.97% (11/58) 2.3 1.2e-05 0.000161
GO:0006399 tRNA metabolic process 6.9% (4/58) 4.87 1.1e-05 0.000163
GO:0034641 cellular nitrogen compound metabolic process 17.24% (10/58) 2.48 1e-05 0.000169
GO:0005730 nucleolus 3.45% (2/58) 8.23 1.6e-05 0.000186
GO:0032555 purine ribonucleotide binding 18.97% (11/58) 2.22 1.9e-05 0.000208
GO:0032553 ribonucleotide binding 18.97% (11/58) 2.2 2.1e-05 0.000216
GO:0097367 carbohydrate derivative binding 18.97% (11/58) 2.2 2.2e-05 0.000217
GO:0016072 rRNA metabolic process 5.17% (3/58) 5.61 3.3e-05 0.000287
GO:0006364 rRNA processing 5.17% (3/58) 5.61 3.3e-05 0.000287
GO:0017076 purine nucleotide binding 18.97% (11/58) 2.13 3.4e-05 0.000288
GO:0000166 nucleotide binding 18.97% (11/58) 2.06 5.3e-05 0.000397
GO:1901265 nucleoside phosphate binding 18.97% (11/58) 2.06 5.3e-05 0.000397
GO:0043168 anion binding 18.97% (11/58) 2.07 5e-05 0.000404
GO:0006418 tRNA aminoacylation for protein translation 5.17% (3/58) 5.26 6.7e-05 0.000483
GO:0036094 small molecule binding 18.97% (11/58) 2.01 7.4e-05 0.000512
GO:0006396 RNA processing 6.9% (4/58) 4.09 9.2e-05 0.000613
GO:0004812 aminoacyl-tRNA ligase activity 5.17% (3/58) 5.01 0.000114 0.000668
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.17% (3/58) 5.01 0.000114 0.000668
GO:0043038 amino acid activation 5.17% (3/58) 5.01 0.000114 0.000668
GO:0043039 tRNA aminoacylation 5.17% (3/58) 5.01 0.000114 0.000668
GO:0090304 nucleic acid metabolic process 12.07% (7/58) 2.65 0.000121 0.000693
GO:0043232 intracellular non-membrane-bounded organelle 8.62% (5/58) 3.34 0.000135 0.000728
GO:0043228 non-membrane-bounded organelle 8.62% (5/58) 3.34 0.000135 0.000728
GO:0043167 ion binding 24.14% (14/58) 1.52 0.000251 0.001318
GO:0044237 cellular metabolic process 20.69% (12/58) 1.69 0.000265 0.00132
GO:0006139 nucleobase-containing compound metabolic process 12.07% (7/58) 2.47 0.00026 0.001328
GO:0009987 cellular process 25.86% (15/58) 1.41 0.000326 0.001583
GO:0006725 cellular aromatic compound metabolic process 12.07% (7/58) 2.38 0.000382 0.001763
GO:0046483 heterocycle metabolic process 12.07% (7/58) 2.38 0.000382 0.001763
GO:1901360 organic cyclic compound metabolic process 12.07% (7/58) 2.35 0.000429 0.001935
GO:0043170 macromolecule metabolic process 20.69% (12/58) 1.57 0.000554 0.002441
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.45% (2/58) 5.71 0.000672 0.002899
GO:0016874 ligase activity 5.17% (3/58) 4.12 0.000706 0.002976
GO:0005524 ATP binding 13.79% (8/58) 2.02 0.000737 0.00304
GO:0008173 RNA methyltransferase activity 3.45% (2/58) 5.59 0.000796 0.003216
GO:0006520 amino acid metabolic process 5.17% (3/58) 3.89 0.00112 0.004345
GO:0032559 adenyl ribonucleotide binding 13.79% (8/58) 1.93 0.0011 0.004355
GO:0030554 adenyl nucleotide binding 13.79% (8/58) 1.84 0.001679 0.005924
GO:0016435 rRNA (guanine) methyltransferase activity 1.72% (1/58) 9.23 0.001663 0.005975
GO:0070476 rRNA (guanine-N7)-methylation 1.72% (1/58) 9.23 0.001663 0.005975
GO:0036265 RNA (guanine-N7)-methylation 1.72% (1/58) 9.23 0.001663 0.005975
GO:0034511 U3 snoRNA binding 1.72% (1/58) 9.23 0.001663 0.005975
GO:0032561 guanyl ribonucleotide binding 5.17% (3/58) 3.49 0.00243 0.008272
GO:0005525 GTP binding 5.17% (3/58) 3.49 0.00243 0.008272
GO:0019001 guanyl nucleotide binding 5.17% (3/58) 3.46 0.002606 0.008288
GO:0008135 translation factor activity, RNA binding 3.45% (2/58) 4.74 0.00257 0.00831
GO:0045182 translation regulator activity 3.45% (2/58) 4.74 0.00257 0.00831
GO:0090079 translation regulator activity, nucleic acid binding 3.45% (2/58) 4.74 0.00257 0.00831
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.72% (1/58) 8.23 0.003323 0.010074
GO:0006433 prolyl-tRNA aminoacylation 1.72% (1/58) 8.23 0.003323 0.010074
GO:0004827 proline-tRNA ligase activity 1.72% (1/58) 8.23 0.003323 0.010074
GO:0006807 nitrogen compound metabolic process 18.97% (11/58) 1.33 0.003637 0.010854
GO:0008152 metabolic process 22.41% (13/58) 1.17 0.004041 0.011877
GO:0006082 organic acid metabolic process 5.17% (3/58) 3.21 0.004237 0.011913
GO:0019752 carboxylic acid metabolic process 5.17% (3/58) 3.22 0.004177 0.011917
GO:0043436 oxoacid metabolic process 5.17% (3/58) 3.22 0.004177 0.011917
GO:0008150 biological_process 29.31% (17/58) 0.92 0.005562 0.014987
GO:0009059 macromolecule biosynthetic process 6.9% (4/58) 2.5 0.005449 0.015101
GO:0110165 cellular anatomical entity 13.79% (8/58) 1.55 0.005537 0.015128
GO:0071704 organic substance metabolic process 20.69% (12/58) 1.16 0.006151 0.016347
GO:0030515 snoRNA binding 1.72% (1/58) 7.23 0.006636 0.017165
GO:0016423 tRNA (guanine) methyltransferase activity 1.72% (1/58) 7.23 0.006636 0.017165
GO:0005840 ribosome 5.17% (3/58) 2.79 0.009443 0.024105
GO:0006412 translation 5.17% (3/58) 2.76 0.010042 0.024976
GO:0008175 tRNA methyltransferase activity 1.72% (1/58) 6.65 0.009938 0.025038
GO:0043043 peptide biosynthetic process 5.17% (3/58) 2.73 0.010557 0.025601
GO:0003735 structural constituent of ribosome 5.17% (3/58) 2.73 0.010453 0.025669
GO:0043604 amide biosynthetic process 5.17% (3/58) 2.68 0.011523 0.027598
GO:0006518 peptide metabolic process 5.17% (3/58) 2.67 0.011856 0.028049
GO:0005198 structural molecule activity 5.17% (3/58) 2.65 0.012194 0.028502
GO:0044238 primary metabolic process 18.97% (11/58) 1.08 0.012936 0.029876
GO:0008170 N-methyltransferase activity 1.72% (1/58) 6.23 0.013229 0.030193
GO:0043603 amide metabolic process 5.17% (3/58) 2.6 0.013483 0.030414
GO:0005575 cellular_component 13.79% (8/58) 1.31 0.014273 0.031828
GO:0006414 translational elongation 1.72% (1/58) 6.06 0.01487 0.032782
GO:0003924 GTPase activity 3.45% (2/58) 3.41 0.015284 0.033316
GO:0051020 GTPase binding 1.72% (1/58) 5.91 0.016509 0.034813
GO:0031267 small GTPase binding 1.72% (1/58) 5.91 0.016509 0.034813
GO:0044281 small molecule metabolic process 5.17% (3/58) 2.5 0.016151 0.034814
GO:0031167 rRNA methylation 1.72% (1/58) 5.77 0.018145 0.037054
GO:0070475 rRNA base methylation 1.72% (1/58) 5.77 0.018145 0.037054
GO:0000154 rRNA modification 1.72% (1/58) 5.77 0.018145 0.037054
GO:0008649 rRNA methyltransferase activity 1.72% (1/58) 5.65 0.019779 0.039557
GO:0003746 translation elongation factor activity 1.72% (1/58) 5.65 0.019779 0.039557
GO:0044249 cellular biosynthetic process 6.9% (4/58) 1.92 0.021408 0.042379
GO:0034728 nucleosome organization 1.72% (1/58) 5.33 0.024663 0.047846
GO:0006334 nucleosome assembly 1.72% (1/58) 5.33 0.024663 0.047846
GO:0005634 nucleus 3.45% (2/58) 3.02 0.025321 0.048637
GO:0065004 protein-DNA complex assembly 1.72% (1/58) 5.23 0.026286 0.049509
GO:0001510 RNA methylation 1.72% (1/58) 5.23 0.026286 0.049509
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.036 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.024 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_95 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_256 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_78 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_188 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.028 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_25 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_64 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_72 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_85 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_91 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_158 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_230 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_12 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_100 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (58) (download table)

InterPro Domains

GO Terms

Family Terms