Coexpression cluster: Cluster_178 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 11.04% (17/154) 2.53 0.0 3e-06
GO:1901360 organic cyclic compound metabolic process 9.09% (14/154) 2.02 1.1e-05 0.000508
GO:0090304 nucleic acid metabolic process 7.79% (12/154) 2.25 1e-05 0.000547
GO:0005488 binding 40.91% (63/154) 0.71 1e-05 0.000633
GO:0046483 heterocycle metabolic process 9.09% (14/154) 2.05 9e-06 0.000704
GO:0003676 nucleic acid binding 16.88% (26/154) 1.37 7e-06 0.000815
GO:0034660 ncRNA metabolic process 4.55% (7/154) 3.4 5e-06 0.000823
GO:0010608 post-transcriptional regulation of gene expression 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0034248 regulation of amide metabolic process 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0010628 positive regulation of gene expression 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0051130 positive regulation of cellular component organization 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0045905 positive regulation of translational termination 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0045901 positive regulation of translational elongation 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0045727 positive regulation of translation 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0034250 positive regulation of amide metabolic process 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0043243 positive regulation of protein-containing complex disassembly 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0051247 positive regulation of protein metabolic process 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0006449 regulation of translational termination 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0006448 regulation of translational elongation 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0006417 regulation of translation 1.3% (2/154) 7.05 8.4e-05 0.001142
GO:0006399 tRNA metabolic process 3.25% (5/154) 3.49 8.8e-05 0.001148
GO:0140101 catalytic activity, acting on a tRNA 3.25% (5/154) 3.47 9.5e-05 0.001195
GO:0016070 RNA metabolic process 6.49% (10/154) 2.34 3.2e-05 0.001297
GO:0006725 cellular aromatic compound metabolic process 8.44% (13/154) 1.94 4e-05 0.001441
GO:0003746 translation elongation factor activity 1.95% (3/154) 5.25 6.6e-05 0.001962
GO:0006139 nucleobase-containing compound metabolic process 7.79% (12/154) 1.97 6.3e-05 0.002065
GO:0006418 tRNA aminoacylation for protein translation 2.6% (4/154) 3.7 0.000269 0.003247
GO:0009893 positive regulation of metabolic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0031328 positive regulation of cellular biosynthetic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0031325 positive regulation of cellular metabolic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0051173 positive regulation of nitrogen compound metabolic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0009891 positive regulation of biosynthetic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0010557 positive regulation of macromolecule biosynthetic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0010604 positive regulation of macromolecule metabolic process 1.3% (2/154) 6.05 0.000388 0.003247
GO:0043244 regulation of protein-containing complex disassembly 1.3% (2/154) 6.25 0.000292 0.003401
GO:0043039 tRNA aminoacylation 2.6% (4/154) 3.59 0.000352 0.00359
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.6% (4/154) 3.59 0.000352 0.00359
GO:0004812 aminoacyl-tRNA ligase activity 2.6% (4/154) 3.59 0.000352 0.00359
GO:0043038 amino acid activation 2.6% (4/154) 3.59 0.000352 0.00359
GO:0045182 translation regulator activity 2.6% (4/154) 3.48 0.000471 0.003658
GO:0008135 translation factor activity, RNA binding 2.6% (4/154) 3.48 0.000471 0.003658
GO:0090079 translation regulator activity, nucleic acid binding 2.6% (4/154) 3.48 0.000471 0.003658
GO:0048522 positive regulation of cellular process 1.3% (2/154) 5.88 0.000498 0.003777
GO:0043022 ribosome binding 1.3% (2/154) 5.73 0.000621 0.004603
GO:0070647 protein modification by small protein conjugation or removal 3.25% (5/154) 2.87 0.000653 0.004733
GO:0034641 cellular nitrogen compound metabolic process 9.09% (14/154) 1.45 0.000674 0.004775
GO:0006520 amino acid metabolic process 3.25% (5/154) 2.7 0.001113 0.007557
GO:0043933 protein-containing complex organization 2.6% (4/154) 3.16 0.001096 0.007605
GO:0043687 post-translational protein modification 3.25% (5/154) 2.62 0.001402 0.009139
GO:0006396 RNA processing 3.25% (5/154) 2.62 0.001402 0.009139
GO:0044877 protein-containing complex binding 1.95% (3/154) 3.73 0.00153 0.009781
GO:0043021 ribonucleoprotein complex binding 1.3% (2/154) 5.05 0.001632 0.010233
GO:0051128 regulation of cellular component organization 1.3% (2/154) 4.97 0.001845 0.011141
GO:0006357 regulation of transcription by RNA polymerase II 1.3% (2/154) 4.97 0.001845 0.011141
GO:0140640 catalytic activity, acting on a nucleic acid 4.55% (7/154) 2.01 0.001942 0.011508
GO:0016579 protein deubiquitination 1.95% (3/154) 3.59 0.002013 0.011511
GO:0070646 protein modification by small protein removal 1.95% (3/154) 3.59 0.002013 0.011511
GO:0048518 positive regulation of biological process 1.3% (2/154) 4.88 0.002071 0.01164
GO:1901363 heterocyclic compound binding 23.38% (36/154) 0.68 0.002346 0.012537
GO:0097159 organic cyclic compound binding 23.38% (36/154) 0.68 0.002346 0.012537
GO:0019783 ubiquitin-like protein peptidase activity 1.95% (3/154) 3.49 0.00248 0.012631
GO:0101005 deubiquitinase activity 1.95% (3/154) 3.49 0.00248 0.012631
GO:0004843 cysteine-type deubiquitinase activity 1.95% (3/154) 3.49 0.00248 0.012631
GO:0016592 mediator complex 1.3% (2/154) 4.81 0.002309 0.012757
GO:0003712 transcription coregulator activity 1.3% (2/154) 4.66 0.002821 0.014151
GO:0007029 endoplasmic reticulum organization 0.65% (1/154) 8.05 0.003765 0.017787
GO:0003689 DNA clamp loader activity 0.65% (1/154) 8.05 0.003765 0.017787
GO:0005663 DNA replication factor C complex 0.65% (1/154) 8.05 0.003765 0.017787
GO:0009411 response to UV 0.65% (1/154) 8.05 0.003765 0.017787
GO:0006807 nitrogen compound metabolic process 16.88% (26/154) 0.78 0.004378 0.020101
GO:0016874 ligase activity 2.6% (4/154) 2.61 0.004345 0.020233
GO:0016043 cellular component organization 3.9% (6/154) 1.97 0.004574 0.020428
GO:0034470 ncRNA processing 1.95% (3/154) 3.18 0.004544 0.020576
GO:0005515 protein binding 14.94% (23/154) 0.83 0.004945 0.021784
GO:0065003 protein-containing complex assembly 1.95% (3/154) 3.04 0.005958 0.025555
GO:0043170 macromolecule metabolic process 15.58% (24/154) 0.78 0.006038 0.025564
GO:0140098 catalytic activity, acting on RNA 3.25% (5/154) 2.13 0.005953 0.025875
GO:0071840 cellular component organization or biogenesis 3.9% (6/154) 1.85 0.00684 0.028586
GO:0051246 regulation of protein metabolic process 1.3% (2/154) 3.97 0.0073 0.030124
GO:0043461 proton-transporting ATP synthase complex assembly 0.65% (1/154) 7.05 0.007516 0.030626
GO:0016776 phosphotransferase activity, phosphate group as acceptor 0.65% (1/154) 6.47 0.011252 0.042654
GO:0004655 porphobilinogen synthase activity 0.65% (1/154) 6.47 0.011252 0.042654
GO:0050145 nucleoside monophosphate kinase activity 0.65% (1/154) 6.47 0.011252 0.042654
GO:0031369 translation initiation factor binding 0.65% (1/154) 6.47 0.011252 0.042654
GO:0004017 adenylate kinase activity 0.65% (1/154) 6.47 0.011252 0.042654
GO:0022607 cellular component assembly 1.95% (3/154) 2.71 0.011145 0.044856
GO:0140513 nuclear protein-containing complex 1.95% (3/154) 2.65 0.012415 0.046521
GO:0006082 organic acid metabolic process 3.25% (5/154) 1.84 0.013475 0.048809
GO:0019752 carboxylic acid metabolic process 3.25% (5/154) 1.84 0.013333 0.048836
GO:0043436 oxoacid metabolic process 3.25% (5/154) 1.84 0.013333 0.048836
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_6 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_290 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (154) (download table)

InterPro Domains

GO Terms

Family Terms