Coexpression cluster: Cluster_210 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 14.94% (13/87) 2.16 6e-06 0.001449
GO:0140640 catalytic activity, acting on a nucleic acid 8.05% (7/87) 2.83 6.1e-05 0.004816
GO:0003676 nucleic acid binding 19.54% (17/87) 1.58 4.1e-05 0.004874
GO:0009059 macromolecule biosynthetic process 9.2% (8/87) 2.4 0.000141 0.008375
GO:0003723 RNA binding 9.2% (8/87) 2.27 0.000266 0.012626
GO:0031420 alkali metal ion binding 2.3% (2/87) 5.48 0.000915 0.012752
GO:0030955 potassium ion binding 2.3% (2/87) 5.48 0.000915 0.012752
GO:0004743 pyruvate kinase activity 2.3% (2/87) 5.48 0.000915 0.012752
GO:0006139 nucleobase-containing compound metabolic process 9.2% (8/87) 2.21 0.000342 0.013524
GO:1901360 organic cyclic compound metabolic process 9.2% (8/87) 2.03 0.00077 0.014045
GO:0071704 organic substance metabolic process 25.29% (22/87) 0.99 0.001068 0.014057
GO:0008152 metabolic process 26.44% (23/87) 0.94 0.001268 0.014312
GO:0005488 binding 40.23% (35/87) 0.69 0.001213 0.014372
GO:1901576 organic substance biosynthetic process 10.34% (9/87) 1.8 0.001152 0.014373
GO:0043603 amide metabolic process 6.9% (6/87) 2.48 0.000739 0.014588
GO:0006725 cellular aromatic compound metabolic process 9.2% (8/87) 2.06 0.000678 0.014604
GO:0016070 RNA metabolic process 6.9% (6/87) 2.43 0.000894 0.015138
GO:0046483 heterocycle metabolic process 9.2% (8/87) 2.06 0.000673 0.015949
GO:0044238 primary metabolic process 24.14% (21/87) 0.99 0.001507 0.016239
GO:0006518 peptide metabolic process 6.9% (6/87) 2.52 0.000652 0.017164
GO:0090304 nucleic acid metabolic process 8.05% (7/87) 2.29 0.000587 0.017404
GO:0140101 catalytic activity, acting on a tRNA 3.45% (3/87) 3.56 0.002181 0.018461
GO:0044271 cellular nitrogen compound biosynthetic process 8.05% (7/87) 2.01 0.0018 0.018548
GO:0004819 glutamine-tRNA ligase activity 1.15% (1/87) 8.88 0.002127 0.018669
GO:0006425 glutaminyl-tRNA aminoacylation 1.15% (1/87) 8.88 0.002127 0.018669
GO:0034660 ncRNA metabolic process 4.6% (4/87) 3.42 0.000558 0.018897
GO:0044249 cellular biosynthetic process 9.2% (8/87) 1.78 0.002314 0.01891
GO:0044237 cellular metabolic process 19.54% (17/87) 1.1 0.001979 0.019538
GO:0006399 tRNA metabolic process 3.45% (3/87) 3.58 0.002079 0.019711
GO:0005840 ribosome 5.75% (5/87) 2.39 0.002755 0.019784
GO:1901363 heterocyclic compound binding 26.44% (23/87) 0.86 0.002687 0.019904
GO:0097159 organic cyclic compound binding 26.44% (23/87) 0.86 0.002687 0.019904
GO:0043226 organelle 8.05% (7/87) 1.87 0.003087 0.020326
GO:0043229 intracellular organelle 8.05% (7/87) 1.87 0.003087 0.020326
GO:0003735 structural constituent of ribosome 5.75% (5/87) 2.33 0.003228 0.020678
GO:0043043 peptide biosynthetic process 5.75% (5/87) 2.32 0.003348 0.020879
GO:0009058 biosynthetic process 10.34% (9/87) 1.62 0.002665 0.021051
GO:0006412 translation 5.75% (5/87) 2.35 0.003055 0.021294
GO:0043604 amide biosynthetic process 5.75% (5/87) 2.3 0.003564 0.02166
GO:0000491 small nucleolar ribonucleoprotein complex assembly 1.15% (1/87) 7.88 0.004249 0.023978
GO:0000492 box C/D snoRNP assembly 1.15% (1/87) 7.88 0.004249 0.023978
GO:0140098 catalytic activity, acting on RNA 4.6% (4/87) 2.63 0.004057 0.024038
GO:0043228 non-membrane-bounded organelle 5.75% (5/87) 2.2 0.004723 0.024875
GO:0043232 intracellular non-membrane-bounded organelle 5.75% (5/87) 2.2 0.004723 0.024875
GO:0043170 macromolecule metabolic process 18.39% (16/87) 1.02 0.004685 0.025821
GO:0005198 structural molecule activity 5.75% (5/87) 2.17 0.005163 0.0266
GO:0140658 ATP-dependent chromatin remodeler activity 2.3% (2/87) 4.15 0.005743 0.028959
GO:0006096 glycolytic process 2.3% (2/87) 3.97 0.007306 0.036074
GO:0006082 organic acid metabolic process 4.6% (4/87) 2.34 0.008211 0.037421
GO:0006090 pyruvate metabolic process 2.3% (2/87) 3.92 0.007784 0.03765
GO:0019752 carboxylic acid metabolic process 4.6% (4/87) 2.35 0.008135 0.037804
GO:0043436 oxoacid metabolic process 4.6% (4/87) 2.35 0.008135 0.037804
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.15% (1/87) 6.88 0.008481 0.037923
GO:0006807 nitrogen compound metabolic process 18.39% (16/87) 0.9 0.01014 0.044503
GO:0016052 carbohydrate catabolic process 2.3% (2/87) 3.63 0.011509 0.049591
GO:0008094 ATP-dependent activity, acting on DNA 2.3% (2/87) 3.61 0.011799 0.049936
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_6 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_48 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_127 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_159 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_166 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_172 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_182 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_226 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_245 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_246 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_250 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_261 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_265 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_266 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_269 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_268 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (87) (download table)

InterPro Domains

GO Terms

Family Terms