Coexpression cluster: Cluster_4 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 21.05% (32/152) 2.78 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 13.16% (20/152) 3.1 0.0 0.0
GO:0043043 peptide biosynthetic process 10.53% (16/152) 3.48 0.0 0.0
GO:0043604 amide biosynthetic process 10.53% (16/152) 3.46 0.0 0.0
GO:0003735 structural constituent of ribosome 10.53% (16/152) 3.49 0.0 0.0
GO:0006412 translation 10.53% (16/152) 3.5 0.0 0.0
GO:0005198 structural molecule activity 11.18% (17/152) 3.38 0.0 0.0
GO:0006518 peptide metabolic process 10.53% (16/152) 3.37 0.0 0.0
GO:0043603 amide metabolic process 10.53% (16/152) 3.33 0.0 0.0
GO:0005840 ribosome 9.87% (15/152) 3.45 0.0 0.0
GO:0043229 intracellular organelle 12.5% (19/152) 2.82 0.0 0.0
GO:0043226 organelle 12.5% (19/152) 2.82 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 9.87% (15/152) 3.22 0.0 0.0
GO:0043228 non-membrane-bounded organelle 9.87% (15/152) 3.22 0.0 0.0
GO:0009058 biosynthetic process 15.13% (23/152) 2.33 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 11.84% (18/152) 2.74 0.0 0.0
GO:1901576 organic substance biosynthetic process 13.82% (21/152) 2.35 0.0 0.0
GO:0044249 cellular biosynthetic process 13.16% (20/152) 2.43 0.0 0.0
GO:0009059 macromolecule biosynthetic process 10.53% (16/152) 2.77 0.0 0.0
GO:0006807 nitrogen compound metabolic process 26.32% (40/152) 1.43 0.0 0.0
GO:0043170 macromolecule metabolic process 23.68% (36/152) 1.4 0.0 1e-06
GO:0006139 nucleobase-containing compound metabolic process 10.53% (16/152) 2.42 0.0 1e-06
GO:0090304 nucleic acid metabolic process 9.21% (14/152) 2.58 0.0 2e-06
GO:0044237 cellular metabolic process 23.03% (35/152) 1.36 0.0 2e-06
GO:0006725 cellular aromatic compound metabolic process 10.53% (16/152) 2.3 0.0 2e-06
GO:0046483 heterocycle metabolic process 10.53% (16/152) 2.29 0.0 2e-06
GO:0044238 primary metabolic process 26.97% (41/152) 1.19 0.0 3e-06
GO:1901360 organic cyclic compound metabolic process 10.53% (16/152) 2.24 0.0 4e-06
GO:0071704 organic substance metabolic process 26.97% (41/152) 1.14 1e-06 7e-06
GO:0008152 metabolic process 28.29% (43/152) 1.1 1e-06 8e-06
GO:0006259 DNA metabolic process 4.61% (7/152) 3.58 2e-06 2.3e-05
GO:1901564 organonitrogen compound metabolic process 19.08% (29/152) 1.19 2.1e-05 0.000209
GO:0097159 organic cyclic compound binding 26.32% (40/152) 0.93 3.1e-05 0.000292
GO:1901363 heterocyclic compound binding 26.32% (40/152) 0.93 3.1e-05 0.000292
GO:0009987 cellular process 26.32% (40/152) 0.92 3.8e-05 0.000348
GO:0035639 purine ribonucleoside triphosphate binding 14.47% (22/152) 1.32 6.9e-05 0.000608
GO:0003674 molecular_function 51.97% (79/152) 0.5 9.7e-05 0.000835
GO:0005575 cellular_component 17.11% (26/152) 1.12 0.000144 0.001202
GO:0005488 binding 35.53% (54/152) 0.67 0.000156 0.001264
GO:0005524 ATP binding 12.5% (19/152) 1.29 0.000301 0.002383
GO:0110165 cellular anatomical entity 14.47% (22/152) 1.15 0.000361 0.002793
GO:0032555 purine ribonucleotide binding 14.47% (22/152) 1.1 0.000572 0.004321
GO:0019538 protein metabolic process 15.13% (23/152) 1.07 0.000586 0.004321
GO:0036094 small molecule binding 15.79% (24/152) 1.04 0.000601 0.004331
GO:0032553 ribonucleotide binding 14.47% (22/152) 1.09 0.000624 0.004395
GO:0097367 carbohydrate derivative binding 14.47% (22/152) 1.09 0.000656 0.00452
GO:0006260 DNA replication 1.97% (3/152) 4.13 0.000688 0.004642
GO:0003676 nucleic acid binding 11.84% (18/152) 1.21 0.000805 0.005314
GO:1901265 nucleoside phosphate binding 15.13% (23/152) 1.02 0.000887 0.005626
GO:0000166 nucleotide binding 15.13% (23/152) 1.02 0.000887 0.005626
GO:0043168 anion binding 15.13% (23/152) 1.02 0.000938 0.005831
GO:0008150 biological_process 32.89% (50/152) 0.59 0.001008 0.006143
GO:0017076 purine nucleotide binding 14.47% (22/152) 1.02 0.001163 0.006958
GO:0016070 RNA metabolic process 4.61% (7/152) 1.99 0.002032 0.011927
GO:0016874 ligase activity 2.63% (4/152) 2.9 0.002102 0.012115
GO:0032559 adenyl ribonucleotide binding 12.5% (19/152) 1.04 0.002227 0.012606
GO:0001522 pseudouridine synthesis 1.32% (2/152) 4.68 0.00275 0.015032
GO:1990234 transferase complex 1.97% (3/152) 3.44 0.00275 0.015295
GO:0006281 DNA repair 1.97% (3/152) 3.25 0.003991 0.017817
GO:0031267 small GTPase binding 1.32% (2/152) 4.41 0.003955 0.017909
GO:0051020 GTPase binding 1.32% (2/152) 4.41 0.003955 0.017909
GO:0030915 Smc5-Smc6 complex 0.66% (1/152) 8.0 0.003906 0.018211
GO:0043625 delta DNA polymerase complex 0.66% (1/152) 8.0 0.003906 0.018211
GO:0008837 diaminopimelate epimerase activity 0.66% (1/152) 8.0 0.003906 0.018211
GO:0042575 DNA polymerase complex 0.66% (1/152) 8.0 0.003906 0.018211
GO:0106068 SUMO ligase complex 0.66% (1/152) 8.0 0.003906 0.018211
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 0.66% (1/152) 8.0 0.003906 0.018211
GO:0004055 argininosuccinate synthase activity 0.66% (1/152) 8.0 0.003906 0.018211
GO:0003937 IMP cyclohydrolase activity 0.66% (1/152) 8.0 0.003906 0.018211
GO:0047661 amino-acid racemase activity 0.66% (1/152) 8.0 0.003906 0.018211
GO:0016853 isomerase activity 2.63% (4/152) 2.71 0.003434 0.018449
GO:0030554 adenyl nucleotide binding 12.5% (19/152) 0.96 0.004199 0.018488
GO:0051716 cellular response to stimulus 1.97% (3/152) 3.18 0.004568 0.019305
GO:0033554 cellular response to stress 1.97% (3/152) 3.18 0.004568 0.019305
GO:0006974 DNA damage response 1.97% (3/152) 3.18 0.004568 0.019305
GO:0003723 RNA binding 5.26% (8/152) 1.62 0.004776 0.019923
GO:0140513 nuclear protein-containing complex 1.97% (3/152) 3.11 0.005192 0.021377
GO:0018208 peptidyl-proline modification 1.32% (2/152) 4.19 0.005361 0.021512
GO:0000413 protein peptidyl-prolyl isomerization 1.32% (2/152) 4.19 0.005361 0.021512
GO:0006520 amino acid metabolic process 2.63% (4/152) 2.49 0.005785 0.022923
GO:1902494 catalytic complex 2.63% (4/152) 2.41 0.007093 0.027758
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 0.66% (1/152) 7.0 0.007798 0.029081
GO:0019238 cyclohydrolase activity 0.66% (1/152) 7.0 0.007798 0.029081
GO:0036361 racemase activity, acting on amino acids and derivatives 0.66% (1/152) 7.0 0.007798 0.029081
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 0.66% (1/152) 7.0 0.007798 0.029081
GO:0006553 lysine metabolic process 0.66% (1/152) 6.41 0.011674 0.038548
GO:0046451 diaminopimelate metabolic process 0.66% (1/152) 6.41 0.011674 0.038548
GO:0009085 lysine biosynthetic process 0.66% (1/152) 6.41 0.011674 0.038548
GO:0009089 lysine biosynthetic process via diaminopimelate 0.66% (1/152) 6.41 0.011674 0.038548
GO:0019136 deoxynucleoside kinase activity 0.66% (1/152) 6.41 0.011674 0.038548
GO:0019206 nucleoside kinase activity 0.66% (1/152) 6.41 0.011674 0.038548
GO:0004797 thymidine kinase activity 0.66% (1/152) 6.41 0.011674 0.038548
GO:0000723 telomere maintenance 0.66% (1/152) 6.41 0.011674 0.038548
GO:0032200 telomere organization 0.66% (1/152) 6.41 0.011674 0.038548
GO:0004019 adenylosuccinate synthase activity 0.66% (1/152) 6.41 0.011674 0.038548
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.32% (2/152) 3.68 0.010729 0.039549
GO:0005634 nucleus 2.63% (4/152) 2.14 0.013449 0.043952
GO:0031461 cullin-RING ubiquitin ligase complex 0.66% (1/152) 6.0 0.015535 0.047812
GO:0016255 attachment of GPI anchor to protein 0.66% (1/152) 6.0 0.015535 0.047812
GO:0030515 snoRNA binding 0.66% (1/152) 6.0 0.015535 0.047812
GO:0000152 nuclear ubiquitin ligase complex 0.66% (1/152) 6.0 0.015535 0.047812
GO:0005680 anaphase-promoting complex 0.66% (1/152) 6.0 0.015535 0.047812
GO:0019899 enzyme binding 1.32% (2/152) 3.39 0.015811 0.048193
GO:1901607 alpha-amino acid biosynthetic process 1.32% (2/152) 3.41 0.015204 0.049181
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_22 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.035 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_30 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_42 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_60 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_106 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_124 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_126 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_149 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_193 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_218 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (152) (download table)

InterPro Domains

GO Terms

Family Terms