Coexpression cluster: Cluster_93 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901363 heterocyclic compound binding 35.51% (38/107) 1.29 0.0 9e-06
GO:0097159 organic cyclic compound binding 35.51% (38/107) 1.29 0.0 9e-06
GO:0006457 protein folding 4.67% (5/107) 5.09 0.0 3.9e-05
GO:0019867 outer membrane 3.74% (4/107) 5.93 1e-06 4.1e-05
GO:0036094 small molecule binding 22.43% (24/107) 1.6 1e-06 5e-05
GO:0006520 amino acid metabolic process 6.54% (7/107) 3.71 1e-06 6.2e-05
GO:0044281 small molecule metabolic process 9.35% (10/107) 2.75 3e-06 0.000113
GO:0006082 organic acid metabolic process 7.48% (8/107) 3.04 6e-06 0.000176
GO:0019752 carboxylic acid metabolic process 7.48% (8/107) 3.05 6e-06 0.00019
GO:0043436 oxoacid metabolic process 7.48% (8/107) 3.05 6e-06 0.00019
GO:0005488 binding 44.86% (48/107) 0.85 6e-06 0.000221
GO:0140662 ATP-dependent protein folding chaperone 3.74% (4/107) 4.7 1.8e-05 0.00046
GO:0044183 protein folding chaperone 3.74% (4/107) 4.58 2.5e-05 0.000545
GO:0043168 anion binding 19.63% (21/107) 1.44 2.3e-05 0.000546
GO:0016874 ligase activity 4.67% (5/107) 3.46 9.8e-05 0.001883
GO:0017076 purine nucleotide binding 17.76% (19/107) 1.4 9.3e-05 0.001901
GO:0006725 cellular aromatic compound metabolic process 9.35% (10/107) 2.09 0.000131 0.00223
GO:0046483 heterocycle metabolic process 9.35% (10/107) 2.09 0.00013 0.00234
GO:1901265 nucleoside phosphate binding 17.76% (19/107) 1.33 0.000173 0.002411
GO:0000166 nucleotide binding 17.76% (19/107) 1.33 0.000173 0.002411
GO:1901360 organic cyclic compound metabolic process 9.35% (10/107) 2.06 0.000154 0.002479
GO:0030554 adenyl nucleotide binding 15.89% (17/107) 1.44 0.000162 0.002483
GO:0004784 superoxide dismutase activity 1.87% (2/107) 6.41 0.000241 0.002733
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 1.87% (2/107) 6.41 0.000241 0.002733
GO:0003723 RNA binding 8.41% (9/107) 2.14 0.000221 0.002812
GO:0043167 ion binding 23.36% (25/107) 1.08 0.000219 0.002911
GO:0034641 cellular nitrogen compound metabolic process 11.21% (12/107) 1.75 0.00024 0.002938
GO:0006139 nucleobase-containing compound metabolic process 8.41% (9/107) 2.08 0.000291 0.003176
GO:0030170 pyridoxal phosphate binding 3.74% (4/107) 3.62 0.000326 0.003327
GO:0070279 vitamin B6 binding 3.74% (4/107) 3.62 0.000326 0.003327
GO:0019842 vitamin binding 3.74% (4/107) 3.5 0.00045 0.004443
GO:1901566 organonitrogen compound biosynthetic process 7.48% (8/107) 2.11 0.000561 0.005368
GO:0008652 amino acid biosynthetic process 2.8% (3/107) 4.05 0.000804 0.007031
GO:0003916 DNA topoisomerase activity 1.87% (2/107) 5.58 0.000794 0.007148
GO:0006265 DNA topological change 1.87% (2/107) 5.58 0.000794 0.007148
GO:0072593 reactive oxygen species metabolic process 1.87% (2/107) 5.49 0.000899 0.007431
GO:0006801 superoxide metabolic process 1.87% (2/107) 5.49 0.000899 0.007431
GO:0009058 biosynthetic process 10.28% (11/107) 1.61 0.000991 0.00798
GO:0043039 tRNA aminoacylation 2.8% (3/107) 3.7 0.001625 0.009381
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.8% (3/107) 3.7 0.001625 0.009381
GO:0004812 aminoacyl-tRNA ligase activity 2.8% (3/107) 3.7 0.001625 0.009381
GO:0043038 amino acid activation 2.8% (3/107) 3.7 0.001625 0.009381
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.87% (2/107) 5.12 0.001513 0.009647
GO:0003676 nucleic acid binding 14.95% (16/107) 1.2 0.001554 0.009702
GO:0097367 carbohydrate derivative binding 14.95% (16/107) 1.21 0.001427 0.009702
GO:0140640 catalytic activity, acting on a nucleic acid 5.61% (6/107) 2.31 0.001406 0.009775
GO:0035639 purine ribonucleoside triphosphate binding 14.02% (15/107) 1.25 0.001502 0.009776
GO:0008483 transaminase activity 1.87% (2/107) 5.19 0.001378 0.009806
GO:0016769 transferase activity, transferring nitrogenous groups 1.87% (2/107) 5.19 0.001378 0.009806
GO:0044237 cellular metabolic process 18.69% (20/107) 1.04 0.001478 0.009835
GO:0032555 purine ribonucleotide binding 14.95% (16/107) 1.23 0.001258 0.009871
GO:0032553 ribonucleotide binding 14.95% (16/107) 1.22 0.001335 0.009963
GO:0006418 tRNA aminoacylation for protein translation 2.8% (3/107) 3.81 0.001326 0.010145
GO:0045182 translation regulator activity 2.8% (3/107) 3.59 0.002022 0.010857
GO:0090079 translation regulator activity, nucleic acid binding 2.8% (3/107) 3.59 0.002022 0.010857
GO:0008135 translation factor activity, RNA binding 2.8% (3/107) 3.59 0.002022 0.010857
GO:0090304 nucleic acid metabolic process 6.54% (7/107) 1.99 0.00198 0.011222
GO:0032559 adenyl ribonucleotide binding 13.08% (14/107) 1.24 0.002324 0.012263
GO:0071103 DNA conformation change 1.87% (2/107) 4.77 0.002451 0.012712
GO:0006426 glycyl-tRNA aminoacylation 0.93% (1/107) 8.58 0.002616 0.013122
GO:0004820 glycine-tRNA ligase activity 0.93% (1/107) 8.58 0.002616 0.013122
GO:0005524 ATP binding 12.15% (13/107) 1.28 0.002752 0.013581
GO:0009987 cellular process 25.23% (27/107) 0.78 0.002938 0.014272
GO:0006399 tRNA metabolic process 2.8% (3/107) 3.28 0.003734 0.017855
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.87% (2/107) 4.45 0.003812 0.017947
GO:0140101 catalytic activity, acting on a tRNA 2.8% (3/107) 3.26 0.003914 0.018149
GO:0005737 cytoplasm 2.8% (3/107) 3.17 0.004586 0.020944
GO:0006450 regulation of translational fidelity 0.93% (1/107) 7.58 0.005225 0.023512
GO:0046394 carboxylic acid biosynthetic process 2.8% (3/107) 3.07 0.005659 0.024739
GO:0016053 organic acid biosynthetic process 2.8% (3/107) 3.07 0.005659 0.024739
GO:0051276 chromosome organization 1.87% (2/107) 4.12 0.005969 0.025727
GO:0042586 peptide deformylase activity 0.93% (1/107) 6.99 0.007827 0.029939
GO:0006420 arginyl-tRNA aminoacylation 0.93% (1/107) 6.99 0.007827 0.029939
GO:0004637 phosphoribosylamine-glycine ligase activity 0.93% (1/107) 6.99 0.007827 0.029939
GO:0006144 purine nucleobase metabolic process 0.93% (1/107) 6.99 0.007827 0.029939
GO:0009113 purine nucleobase biosynthetic process 0.93% (1/107) 6.99 0.007827 0.029939
GO:0004814 arginine-tRNA ligase activity 0.93% (1/107) 6.99 0.007827 0.029939
GO:0004655 porphobilinogen synthase activity 0.93% (1/107) 6.99 0.007827 0.029939
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.93% (1/107) 6.99 0.007827 0.029939
GO:0044249 cellular biosynthetic process 7.48% (8/107) 1.48 0.008122 0.030683
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.87% (2/107) 3.88 0.008254 0.030802
GO:0140098 catalytic activity, acting on RNA 3.74% (4/107) 2.34 0.008387 0.03092
GO:0140657 ATP-dependent activity 4.67% (5/107) 2.04 0.007727 0.032841
GO:0016597 amino acid binding 0.93% (1/107) 6.58 0.010423 0.037522
GO:0044283 small molecule biosynthetic process 2.8% (3/107) 2.75 0.01037 0.037777
GO:0034660 ncRNA metabolic process 2.8% (3/107) 2.7 0.011207 0.039876
GO:0016070 RNA metabolic process 4.67% (5/107) 1.87 0.012283 0.043202
GO:0016853 isomerase activity 2.8% (3/107) 2.62 0.013182 0.045323
GO:0003743 translation initiation factor activity 1.87% (2/107) 3.53 0.01304 0.045342
GO:0072522 purine-containing compound biosynthetic process 1.87% (2/107) 3.49 0.013801 0.046925
GO:0009112 nucleobase metabolic process 0.93% (1/107) 5.99 0.015594 0.047716
GO:0046451 diaminopimelate metabolic process 0.93% (1/107) 5.99 0.015594 0.047716
GO:0009089 lysine biosynthetic process via diaminopimelate 0.93% (1/107) 5.99 0.015594 0.047716
GO:0006553 lysine metabolic process 0.93% (1/107) 5.99 0.015594 0.047716
GO:0043177 organic acid binding 0.93% (1/107) 5.99 0.015594 0.047716
GO:0031406 carboxylic acid binding 0.93% (1/107) 5.99 0.015594 0.047716
GO:0009085 lysine biosynthetic process 0.93% (1/107) 5.99 0.015594 0.047716
GO:0046112 nucleobase biosynthetic process 0.93% (1/107) 5.99 0.015594 0.047716
GO:0016743 carboxyl- or carbamoyltransferase activity 0.93% (1/107) 5.99 0.015594 0.047716
GO:1901576 organic substance biosynthetic process 7.48% (8/107) 1.33 0.014842 0.04991
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.031 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_95 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_120 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_203 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_205 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_241 0.029 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_243 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_249 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_272 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_40 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_42 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_143 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (107) (download table)

InterPro Domains

GO Terms

Family Terms