Coexpression cluster: Cluster_138 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016887 ATP hydrolysis activity 8.47% (5/59) 4.17 9e-06 0.00141
GO:0004386 helicase activity 5.08% (3/59) 5.12 9.2e-05 0.002392
GO:0016817 hydrolase activity, acting on acid anhydrides 10.17% (6/59) 3.07 8e-05 0.002489
GO:0043167 ion binding 28.81% (17/59) 1.38 0.000154 0.003002
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.17% (6/59) 3.08 7.7e-05 0.003009
GO:0035639 purine ribonucleoside triphosphate binding 20.34% (12/59) 1.79 0.00014 0.003131
GO:0016462 pyrophosphatase activity 10.17% (6/59) 3.11 6.8e-05 0.003544
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.17% (6/59) 3.18 5.3e-05 0.004107
GO:0097367 carbohydrate derivative binding 20.34% (12/59) 1.65 0.00034 0.004815
GO:0032553 ribonucleotide binding 20.34% (12/59) 1.66 0.00032 0.004995
GO:0032555 purine ribonucleotide binding 20.34% (12/59) 1.67 0.000304 0.005267
GO:0017076 purine nucleotide binding 20.34% (12/59) 1.59 0.000495 0.00552
GO:1901363 heterocyclic compound binding 32.2% (19/59) 1.15 0.000477 0.005725
GO:0097159 organic cyclic compound binding 32.2% (19/59) 1.15 0.000477 0.005725
GO:0140657 ATP-dependent activity 8.47% (5/59) 2.9 0.000567 0.005896
GO:1901265 nucleoside phosphate binding 20.34% (12/59) 1.52 0.000758 0.006953
GO:0000166 nucleotide binding 20.34% (12/59) 1.52 0.000758 0.006953
GO:0003723 RNA binding 10.17% (6/59) 2.41 0.000912 0.00749
GO:0043168 anion binding 20.34% (12/59) 1.49 0.000902 0.007816
GO:0036094 small molecule binding 20.34% (12/59) 1.46 0.001132 0.008407
GO:0006139 nucleobase-containing compound metabolic process 10.17% (6/59) 2.36 0.001107 0.008634
GO:0019438 aromatic compound biosynthetic process 6.78% (4/59) 3.08 0.001306 0.009258
GO:0051879 Hsp90 protein binding 1.69% (1/59) 9.44 0.001442 0.009375
GO:0018130 heterocycle biosynthetic process 6.78% (4/59) 3.05 0.001395 0.009463
GO:1901362 organic cyclic compound biosynthetic process 6.78% (4/59) 2.93 0.001909 0.009927
GO:0019001 guanyl nucleotide binding 6.78% (4/59) 2.93 0.00189 0.010167
GO:1901360 organic cyclic compound metabolic process 10.17% (6/59) 2.18 0.002071 0.010422
GO:0006725 cellular aromatic compound metabolic process 10.17% (6/59) 2.21 0.001876 0.01045
GO:0005525 GTP binding 6.78% (4/59) 2.97 0.001743 0.010458
GO:0032561 guanyl ribonucleotide binding 6.78% (4/59) 2.97 0.001743 0.010458
GO:0046483 heterocycle metabolic process 10.17% (6/59) 2.21 0.001865 0.010776
GO:0004252 serine-type endopeptidase activity 3.39% (2/59) 4.76 0.002492 0.01178
GO:0032774 RNA biosynthetic process 5.08% (3/59) 3.5 0.002419 0.011793
GO:0090304 nucleic acid metabolic process 8.47% (5/59) 2.37 0.002842 0.013038
GO:0034641 cellular nitrogen compound metabolic process 11.86% (7/59) 1.83 0.003382 0.015074
GO:0009113 purine nucleobase biosynthetic process 1.69% (1/59) 7.85 0.004321 0.017284
GO:0006144 purine nucleobase metabolic process 1.69% (1/59) 7.85 0.004321 0.017284
GO:0017053 transcription repressor complex 1.69% (1/59) 7.85 0.004321 0.017284
GO:0004637 phosphoribosylamine-glycine ligase activity 1.69% (1/59) 7.85 0.004321 0.017284
GO:0140640 catalytic activity, acting on a nucleic acid 6.78% (4/59) 2.58 0.004514 0.017603
GO:0001181 RNA polymerase I general transcription initiation factor activity 1.69% (1/59) 7.44 0.005757 0.020412
GO:0006361 transcription initiation at RNA polymerase I promoter 1.69% (1/59) 7.44 0.005757 0.020412
GO:0140223 general transcription initiation factor activity 1.69% (1/59) 7.44 0.005757 0.020412
GO:0005488 binding 40.68% (24/59) 0.71 0.005681 0.021616
GO:0044271 cellular nitrogen compound biosynthetic process 8.47% (5/59) 2.09 0.00643 0.022291
GO:0016070 RNA metabolic process 6.78% (4/59) 2.41 0.006906 0.02292
GO:0034654 nucleobase-containing compound biosynthetic process 5.08% (3/59) 2.96 0.006899 0.023397
GO:0046112 nucleobase biosynthetic process 1.69% (1/59) 6.85 0.008624 0.027455
GO:0009112 nucleobase metabolic process 1.69% (1/59) 6.85 0.008624 0.027455
GO:0005524 ATP binding 13.56% (8/59) 1.43 0.009006 0.028098
GO:0006302 double-strand break repair 1.69% (1/59) 6.63 0.010054 0.030752
GO:0030145 manganese ion binding 1.69% (1/59) 6.44 0.011482 0.034445
GO:0006351 DNA-templated transcription 3.39% (2/59) 3.53 0.013094 0.038542
GO:0003676 nucleic acid binding 15.25% (9/59) 1.23 0.013756 0.03974
GO:0016779 nucleotidyltransferase activity 3.39% (2/59) 3.46 0.014363 0.040738
GO:0004175 endopeptidase activity 3.39% (2/59) 3.44 0.014797 0.04122
GO:0032559 adenyl ribonucleotide binding 13.56% (8/59) 1.29 0.015503 0.04243
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_26 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.025 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_147 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_196 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_198 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_244 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_261 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_278 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_286 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_327 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_860 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_2 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_126 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (59) (download table)

InterPro Domains

GO Terms

Family Terms