Coexpression cluster: Cluster_36 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901363 heterocyclic compound binding 34.26% (37/108) 1.24 0.0 2.2e-05
GO:0097159 organic cyclic compound binding 34.26% (37/108) 1.24 0.0 2.2e-05
GO:0003676 nucleic acid binding 22.22% (24/108) 1.77 0.0 2.7e-05
GO:0140098 catalytic activity, acting on RNA 7.41% (8/108) 3.32 2e-06 8.5e-05
GO:0016070 RNA metabolic process 9.26% (10/108) 2.86 1e-06 9.4e-05
GO:0005488 binding 44.44% (48/108) 0.83 8e-06 0.000274
GO:0034660 ncRNA metabolic process 5.56% (6/108) 3.69 8e-06 0.000308
GO:0003723 RNA binding 10.19% (11/108) 2.41 7e-06 0.000346
GO:0090304 nucleic acid metabolic process 9.26% (10/108) 2.49 1.2e-05 0.000378
GO:0140640 catalytic activity, acting on a nucleic acid 7.41% (8/108) 2.71 3.3e-05 0.000924
GO:0034641 cellular nitrogen compound metabolic process 12.04% (13/108) 1.85 6.5e-05 0.001497
GO:0006139 nucleobase-containing compound metabolic process 9.26% (10/108) 2.22 6.1e-05 0.001529
GO:0034470 ncRNA processing 3.7% (4/108) 4.11 9e-05 0.001932
GO:0006725 cellular aromatic compound metabolic process 9.26% (10/108) 2.07 0.000142 0.002627
GO:0046483 heterocycle metabolic process 9.26% (10/108) 2.07 0.00014 0.002789
GO:1901360 organic cyclic compound metabolic process 9.26% (10/108) 2.04 0.000166 0.002889
GO:0006396 RNA processing 4.63% (5/108) 3.13 0.000281 0.004595
GO:0016072 rRNA metabolic process 2.78% (3/108) 4.32 0.000472 0.006907
GO:0006364 rRNA processing 2.78% (3/108) 4.32 0.000472 0.006907
GO:0032553 ribonucleotide binding 14.81% (16/108) 1.2 0.001475 0.020505
GO:0035639 purine ribonucleoside triphosphate binding 13.89% (15/108) 1.24 0.001651 0.020858
GO:0097367 carbohydrate derivative binding 14.81% (16/108) 1.19 0.001576 0.020865
GO:0045182 translation regulator activity 2.78% (3/108) 3.58 0.002077 0.022205
GO:0090079 translation regulator activity, nucleic acid binding 2.78% (3/108) 3.58 0.002077 0.022205
GO:0008135 translation factor activity, RNA binding 2.78% (3/108) 3.58 0.002077 0.022205
GO:0019867 outer membrane 1.85% (2/108) 4.92 0.001991 0.02407
GO:0000387 spliceosomal snRNP assembly 0.93% (1/108) 8.57 0.00264 0.024466
GO:0005525 GTP binding 4.63% (5/108) 2.42 0.002572 0.024657
GO:0032561 guanyl ribonucleotide binding 4.63% (5/108) 2.42 0.002572 0.024657
GO:0019001 guanyl nucleotide binding 4.63% (5/108) 2.38 0.00283 0.025378
GO:0008173 RNA methyltransferase activity 1.85% (2/108) 4.76 0.002496 0.025702
GO:1901265 nucleoside phosphate binding 14.81% (16/108) 1.07 0.003851 0.030589
GO:0000166 nucleotide binding 14.81% (16/108) 1.07 0.003851 0.030589
GO:0032555 purine ribonucleotide binding 13.89% (15/108) 1.12 0.003655 0.031751
GO:0006399 tRNA metabolic process 2.78% (3/108) 3.27 0.003833 0.032291
GO:0043168 anion binding 14.81% (16/108) 1.04 0.004662 0.035999
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.85% (2/108) 4.21 0.005295 0.036803
GO:0070476 rRNA (guanine-N7)-methylation 0.93% (1/108) 7.57 0.005274 0.037591
GO:0036265 RNA (guanine-N7)-methylation 0.93% (1/108) 7.57 0.005274 0.037591
GO:0016435 rRNA (guanine) methyltransferase activity 0.93% (1/108) 7.57 0.005274 0.037591
GO:0017076 purine nucleotide binding 13.89% (15/108) 1.04 0.005987 0.039628
GO:0036094 small molecule binding 14.81% (16/108) 1.0 0.005968 0.040467
GO:0000502 proteasome complex 0.93% (1/108) 6.98 0.0079 0.045755
GO:0042176 regulation of protein catabolic process 0.93% (1/108) 6.98 0.0079 0.045755
GO:0009894 regulation of catabolic process 0.93% (1/108) 6.98 0.0079 0.045755
GO:0006413 translational initiation 1.85% (2/108) 3.95 0.007491 0.046278
GO:0097747 RNA polymerase activity 1.85% (2/108) 3.95 0.007491 0.046278
GO:0034062 5'-3' RNA polymerase activity 1.85% (2/108) 3.95 0.007491 0.046278
GO:0003674 molecular_function 52.78% (57/108) 0.36 0.008752 0.049652
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_107 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_184 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_203 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_229 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_230 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_266 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_628 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_233 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (108) (download table)

InterPro Domains

GO Terms

Family Terms