Heatmap: Cluster_235 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.25 0.24 0.34 0.26 0.15 -0.01 -0.41 0.48 -1.03 -0.85 -1.14 -1.29 0.66 -0.08 0.37 -0.24 -0.13 -0.2 -1.0 -0.76 -0.94 -1.23 2.59 -0.66 -0.23 -0.51 -0.32 -0.18 -0.71 -0.85 -0.29
-0.68 -0.31 -0.3 0.18 -1.1 -0.93 -0.47 0.33 -1.45 -0.53 -0.99 -0.63 0.81 -1.25 -0.65 -0.14 -0.39 0.09 -0.81 -0.71 -0.49 -1.1 2.24 0.49 0.44 0.55 0.41 0.59 -1.82 -0.58 0.84
Bra000507 (FD3)
-1.56 -1.37 -1.75 -0.56 -4.12 -2.74 -0.76 0.59 -2.41 -1.84 -1.77 -1.83 1.05 -1.36 0.01 -1.25 -1.61 -0.74 -2.99 -2.43 -1.5 -2.49 3.53 0.28 0.28 0.6 0.32 0.24 -1.22 -0.35 0.2
Bra000929 (RPP1B)
-2.86 -1.21 -1.62 -0.89 -2.44 -1.42 -0.59 1.53 -2.52 -0.94 -1.75 -1.72 0.77 -0.64 -0.3 -0.09 0.38 0.58 -1.66 -1.64 -0.45 -1.27 3.18 -0.05 0.01 -0.11 0.05 -0.59 -2.04 -1.67 0.34
-1.02 -1.31 -1.03 -0.82 -0.87 -0.86 0.2 0.49 -1.56 -0.57 -0.82 -0.76 0.88 -1.31 -1.09 0.12 0.09 0.48 -0.43 -0.42 -0.29 -0.42 2.51 0.28 0.35 0.13 0.36 -0.18 -0.81 -0.49 0.22
Bra001232 (NSN1)
-1.49 -1.17 -1.24 -1.07 -1.39 -0.85 -0.28 1.06 -3.13 -2.17 -2.23 -2.51 0.56 -0.44 0.11 -0.23 -0.08 0.24 -1.59 -1.27 -1.05 -1.26 3.35 -0.32 -0.18 -0.12 -0.18 -0.55 -1.33 -1.03 0.66
Bra001302 (SAC56)
-1.66 -5.42 -1.7 -2.83 -3.71 -1.93 -2.32 -0.63 -3.78 -1.86 -2.95 -3.12 1.43 -0.84 -0.39 -0.91 -0.1 0.08 -1.98 -2.26 -2.72 -3.49 3.86 -0.26 -0.48 -0.12 -0.16 -0.34 -1.77 -1.36 0.89
Bra002067 (PGIP1)
-3.0 - -0.38 -1.22 -1.78 -3.23 -0.45 -2.86 - 0.66 -1.37 - -1.8 - -0.42 -1.55 -1.81 0.22 -3.43 -1.23 - -1.52 4.35 - -5.25 -1.96 -3.22 - - 0.33 -0.45
-0.28 -0.14 -0.02 -0.25 0.01 -0.02 -0.5 0.1 -0.62 -0.86 -0.84 -0.85 0.32 0.25 0.39 -0.03 -0.22 -0.08 -0.57 -0.64 -0.49 -0.6 2.11 -0.14 -0.01 -0.11 0.05 -0.03 -0.21 -0.36 0.43
Bra002429 (RER1)
-0.91 -1.08 -1.34 -1.26 -0.82 -0.51 -0.26 0.31 -1.31 -1.39 -1.35 -1.15 0.74 -0.32 -0.14 0.03 -0.14 0.55 -1.59 -0.45 -1.16 -1.24 2.91 0.37 -0.4 -0.39 0.14 0.13 -0.52 -0.32 0.57
Bra002460 (RPL12C)
-3.89 -4.9 -4.09 -3.29 -2.95 -2.24 -0.21 0.37 -2.18 -1.6 -2.11 -1.61 1.68 -0.73 -0.6 0.13 0.17 0.71 -1.66 -1.23 -1.31 -0.96 3.75 -1.15 -1.07 -1.28 -1.37 -1.27 -3.19 -2.15 0.26
-2.69 -2.26 -2.16 -1.77 -1.15 -0.61 -0.82 0.22 -1.32 -0.94 -1.33 -1.18 1.29 -0.27 0.26 0.14 -0.24 0.72 -1.05 -0.7 -0.2 -0.67 3.34 -0.39 -0.69 -0.54 -0.63 -1.03 -1.64 -1.46 -0.26
-2.89 -1.07 -1.31 -0.64 -2.86 -1.82 -0.37 0.44 -3.07 -1.9 -2.45 -2.01 1.82 -0.96 -0.07 0.56 0.22 1.46 -1.16 -1.14 -0.87 -1.0 2.93 -0.44 -0.28 0.1 -0.19 -0.67 -2.66 -1.69 0.54
-0.72 -1.29 -1.41 -1.65 -0.12 -0.09 -0.39 0.56 -2.06 -1.54 -2.14 -1.88 0.55 0.15 0.4 0.04 -0.03 0.87 -1.86 -1.07 -0.71 -0.81 3.36 -0.73 -1.01 -1.46 -0.64 -1.41 -1.83 -1.72 0.12
- - - - - - - -3.52 - -3.52 - - -1.77 -3.46 -3.26 - - -3.62 - - - - 4.24 1.06 0.56 0.33 0.71 0.09 -0.0 -0.33 1.07
Bra004376 (CM3)
-1.04 -1.32 -0.73 -0.12 -1.58 -1.08 -1.01 -0.66 -2.12 -0.69 -0.94 -0.77 0.26 -1.37 -1.03 -0.75 0.02 0.57 -0.26 -1.37 -0.37 -1.4 3.27 -0.55 0.1 -0.23 0.17 -0.19 -1.14 -0.24 0.66
Bra004458 (DIM1A)
-0.27 -0.03 -0.01 0.13 -0.76 -0.17 0.13 1.24 -1.47 -1.32 -1.69 -2.17 0.96 -0.2 0.05 -0.26 -0.27 -0.43 -1.95 -0.79 -1.26 -0.79 2.6 -0.38 -0.53 0.08 -0.59 -0.38 -0.54 -0.22 0.3
Bra006661 (ELONGATION FACTOR-TU FAMILY)
-1.19 -0.52 -0.82 -0.16 -1.35 -0.88 -0.28 0.55 -1.41 -0.85 -0.91 -0.87 1.03 -0.41 -0.21 0.64 0.17 0.24 -0.98 -0.22 0.09 -0.45 2.23 0.04 0.37 -0.03 0.07 0.05 -0.87 -0.62 0.27
-1.08 -0.22 -0.23 0.17 -0.37 -0.55 -0.06 0.13 -2.29 -1.66 -1.65 -2.21 0.97 -0.84 -0.45 0.09 -0.05 0.14 -1.46 -1.1 -0.68 -1.09 2.97 0.01 -0.46 0.12 -0.01 -0.65 -1.55 -1.03 0.75
-0.87 -0.61 -1.08 0.13 -0.92 -0.34 0.05 0.47 -2.13 -2.07 -2.44 -1.56 0.67 -0.14 0.39 0.01 -0.31 0.38 -1.4 -0.67 -0.92 -1.24 2.7 0.11 0.35 0.51 0.02 -0.03 -1.29 -0.88 0.46
Bra008463 (IMD2)
-0.59 -0.12 -0.08 -0.25 -0.49 -0.43 -0.33 0.07 -0.78 -0.17 -0.22 -0.24 0.68 -0.54 -0.05 0.17 0.12 0.21 -0.47 -0.2 -0.06 -0.15 1.33 0.23 0.25 0.25 0.22 0.3 -0.58 -0.3 0.17
-1.26 -0.65 -0.15 -0.08 -1.06 -0.75 -0.52 0.49 -1.99 -1.3 -1.84 -1.48 0.98 -0.8 -0.02 0.21 0.24 -0.37 -1.44 -0.86 -0.75 -1.0 2.77 0.12 0.27 0.38 0.31 -0.21 -1.33 -0.96 0.6
-2.36 -1.53 -0.94 -0.8 -1.17 -1.11 0.05 0.44 -2.15 -0.8 -1.84 -1.35 1.54 -1.23 -0.13 0.06 0.16 0.34 -1.35 -0.83 0.13 -0.91 2.82 0.06 0.03 0.34 0.28 -0.37 -1.76 -1.18 0.32
-0.52 -0.25 -0.08 -0.81 -0.62 -0.33 -0.31 0.8 -0.94 -1.41 -1.46 -1.31 0.32 -0.08 0.74 -0.2 -0.63 0.29 -1.05 -0.25 -0.82 -1.39 2.27 -0.04 -0.06 0.06 -0.07 0.37 -0.55 0.12 0.67
Bra010435 (emb1027)
-1.32 -0.79 -1.09 -1.2 -0.22 -0.39 -1.61 -0.38 -1.64 -3.1 -2.49 -1.56 0.63 0.67 0.53 -0.8 -0.61 -0.65 -1.95 -1.84 -1.05 -1.92 3.9 -1.62 -2.15 -2.58 -1.97 -1.83 -2.18 -1.5 -0.1
Bra012012 (PGY1)
-0.13 0.18 0.5 0.22 -0.34 -0.5 -0.36 0.39 -1.5 -0.98 -1.0 -1.21 0.7 -0.16 0.0 -0.09 -0.18 0.12 -1.09 -0.74 -0.6 -0.54 2.21 -0.11 -0.12 0.01 0.12 -0.01 -0.53 -0.41 0.18
Bra012013 (FD3)
-1.13 -0.84 -0.35 -1.08 -1.29 -1.53 -1.08 -0.2 -0.85 -1.44 -0.84 -1.4 1.4 -0.82 0.22 -0.33 -0.96 0.91 -0.74 -1.22 -1.33 -1.15 2.92 -0.34 0.11 -0.01 0.04 -0.61 -0.32 0.23 0.29
-2.64 -2.16 -1.16 -1.09 -0.66 -0.78 -0.4 0.7 -1.46 -1.18 -1.17 -2.12 1.13 0.25 0.69 0.03 0.06 0.67 -0.0 -0.47 -0.6 -0.1 2.94 -0.9 -0.38 -0.23 -0.83 -0.63 -1.77 -1.82 0.04
Bra014187 (TOM6)
-0.51 -0.17 -0.51 -0.05 -0.48 -0.43 -0.05 0.46 -1.86 -1.14 -1.08 -1.23 0.36 -0.39 0.13 -0.18 0.06 0.64 -0.29 -0.19 0.11 -0.09 2.7 -0.1 -0.18 -0.29 -0.32 -0.92 -1.54 -1.35 -0.41
Bra014334 (RPL7B)
-1.51 -0.35 -0.28 -0.23 -1.08 -0.72 -0.2 0.66 -2.3 -1.18 -1.49 -1.74 0.89 -0.75 -0.28 0.12 0.09 -0.18 -1.74 -0.6 -0.37 -0.76 2.61 0.24 0.46 0.39 0.32 0.12 -1.75 -1.02 0.7
-1.31 -0.32 -0.44 -0.18 -0.97 -0.94 -0.43 0.46 -2.83 -1.66 -1.64 -1.75 0.68 -1.3 -0.79 -0.36 -0.27 -0.03 -1.24 -1.15 -0.9 -1.53 3.4 -0.26 -0.19 0.03 0.01 -0.43 -1.68 -1.12 0.25
-1.98 -1.71 -1.93 -1.92 -1.64 -0.76 -0.36 0.36 -2.17 -1.33 -2.6 -2.61 0.61 -0.18 -0.15 -0.78 -0.17 0.62 -1.48 -1.09 -0.91 -1.22 3.84 -1.23 -0.68 -1.0 -0.6 -1.4 -2.89 -2.42 -0.63
Bra018669 (ELONGATION FACTOR-TU FAMILY)
-0.44 -0.13 -0.95 -0.43 -0.35 -0.3 -0.33 -0.02 -0.97 -1.09 -1.04 -1.11 0.35 -0.41 0.16 0.27 0.22 -0.76 -1.12 -0.65 -0.23 -1.05 3.3 -0.76 -0.68 -0.85 -0.66 -0.94 -1.29 -1.24 -0.62
Bra018702 (GK)
-1.19 -1.26 -0.59 -1.51 -4.3 -1.62 -3.0 -0.46 -1.78 0.9 -3.14 -0.53 1.69 -0.44 0.42 -1.2 0.05 0.26 -1.45 -0.01 -0.39 -3.22 3.68 -1.83 -2.73 -3.46 -3.12 -2.81 -1.48 -2.68 -0.77
Bra019148 (FIB2)
-3.65 -3.19 -2.87 -1.59 -2.21 -1.75 -0.26 0.97 -5.73 -3.0 -1.55 -1.51 1.46 -1.5 0.24 -0.37 -0.14 0.76 -1.58 -1.1 -1.36 -1.91 3.64 -0.66 -0.99 -2.55 -2.22 -1.31 -1.05 -0.1 0.38
Bra022753 (CKG)
-3.61 -2.5 -1.96 -1.43 -3.25 -2.26 -0.06 -0.11 -1.76 -0.76 -1.12 -0.97 0.71 -0.71 -0.29 -0.07 0.02 0.06 -1.1 -0.54 -0.9 -0.46 3.39 0.39 0.04 0.51 -0.62 -0.57 -1.41 -1.6 0.33
-4.43 -4.44 -3.49 -3.86 -2.24 -0.45 -0.73 0.41 -1.51 -3.05 -3.24 -2.03 0.63 0.27 1.32 -0.55 -0.94 1.09 -1.29 -1.74 -2.32 -1.64 3.71 -0.88 -0.95 -1.53 -0.75 -1.52 -1.39 -1.85 0.23
-2.56 -2.07 -2.96 -1.52 -1.54 -3.06 -0.88 0.75 -2.14 -5.05 -3.45 -2.47 1.46 -0.45 -0.57 -0.96 -0.44 -1.11 -1.08 -0.76 -1.63 -1.61 3.81 0.01 -0.24 -0.24 -0.84 -0.62 -2.31 -1.79 -0.11
Bra024895 (RPL7B)
-2.37 -1.81 -1.64 -1.16 -1.35 -0.87 0.09 0.75 -3.01 -1.39 -1.67 -1.88 1.15 -0.97 -0.71 0.81 -0.16 -0.25 -1.86 -0.73 -0.76 -1.4 2.87 0.13 0.31 0.33 0.46 -0.07 -1.02 -0.53 0.9
-1.28 -0.26 0.04 0.21 -0.53 -0.84 -0.74 0.2 -1.84 -0.85 -0.81 -1.27 0.69 0.01 0.34 0.1 -0.06 -0.19 -2.29 -0.6 -1.21 -1.0 2.53 0.31 0.26 0.18 0.18 -0.03 -1.03 -0.95 0.75
Bra030495 (RPP1C)
-1.51 -1.03 -0.83 -0.58 -0.12 -0.11 0.1 -0.56 -1.07 -1.16 -1.59 -1.81 -0.14 0.04 0.29 -0.28 -0.97 -0.22 -0.69 -0.18 -0.28 -1.05 2.94 0.33 0.24 0.08 0.34 -0.38 -0.72 -0.49 0.14
Bra030546 (PHB2)
-0.7 -0.07 -0.36 -0.34 -0.63 -0.19 -0.33 -0.17 -1.53 -0.47 -0.75 -1.08 0.28 -0.35 0.25 0.27 0.13 0.32 -0.57 -0.41 -0.07 -0.19 2.61 -0.01 0.04 -0.14 0.02 -0.49 -1.47 -1.09 -0.13
Bra031602 (ELONGATION FACTOR-TU FAMILY)
-1.37 -0.31 -0.96 -0.53 -0.92 -0.32 -0.27 -0.38 -1.37 -0.48 -0.74 -0.83 0.73 -0.15 0.54 0.2 0.08 0.54 -1.22 -0.38 -0.52 -0.12 2.9 -0.49 -0.34 -0.38 -0.27 -0.7 -1.46 -1.07 -0.19
Bra031605 (ELONGATION FACTOR-TU FAMILY)
-0.97 -0.37 -0.93 -0.84 -0.29 0.13 -0.52 -0.51 -0.92 -0.59 -0.64 -0.78 0.24 0.43 0.79 -0.11 -0.2 -0.1 -1.05 -0.64 -0.58 -0.42 3.17 -0.69 -0.69 -0.91 -0.73 -0.87 -1.23 -1.2 -0.68
-0.83 -0.62 -0.65 -0.83 0.07 -0.36 0.32 0.4 -1.44 -1.58 -1.22 -1.2 0.38 0.05 0.54 -0.54 -0.64 -0.26 -1.3 -0.7 -0.75 -0.78 2.53 0.27 -0.01 0.17 0.09 0.49 -0.13 -0.49 0.39
-1.46 -1.85 -0.82 -0.33 -2.46 -1.86 -0.86 0.91 -1.92 -1.56 -1.52 -2.06 0.39 0.23 -0.13 -0.69 -1.46 -0.23 -1.09 -0.54 -1.04 -1.79 3.26 0.1 0.08 0.38 0.23 -0.02 -1.19 -1.01 0.72
Bra033149 (CBF5)
-3.98 -3.55 -3.32 -1.31 -1.59 -0.37 -2.9 0.19 -3.6 -3.58 -3.59 -3.59 1.21 -1.33 0.34 -0.65 -1.11 0.7 -2.46 -1.7 -0.58 -1.76 3.8 -0.19 -0.33 -0.94 -0.85 -0.5 -1.68 -1.27 0.4
-3.84 -2.26 -2.75 -0.82 -2.17 -2.34 -0.23 1.82 -1.28 -1.96 -1.68 -1.81 1.32 -3.7 -1.9 -0.5 -0.09 -0.45 -1.34 -1.35 -0.37 -1.27 3.54 -0.4 -0.56 -0.76 -0.84 -0.21 -2.16 -1.24 -0.0
Bra036475 (NOP10)
-1.94 -1.07 -1.31 -1.91 -2.04 0.01 -1.43 -0.13 -1.54 -1.45 -1.96 -2.47 0.61 -0.53 0.25 -0.29 -0.35 1.21 -1.29 -0.95 -0.6 -1.85 3.72 -2.62 -1.23 -1.06 -0.89 -1.96 -2.07 -1.04 -0.01
-2.05 -0.34 -0.35 -0.06 -1.24 -0.51 0.06 0.61 -3.59 -1.66 -1.54 -1.45 1.35 -1.22 -0.69 0.42 0.21 0.23 -1.26 -0.95 0.1 -0.21 2.63 -0.04 0.28 0.33 0.14 -0.43 -1.82 -1.47 0.22
Bra038742 (CTPS2)
-1.78 -1.74 -1.12 -1.22 -0.72 -0.8 -0.59 0.9 -2.15 -1.45 -0.92 -1.91 0.95 -0.16 -0.54 0.05 -0.45 0.57 -1.29 -0.79 -0.49 -0.66 3.47 -1.19 -0.91 -1.29 -0.7 -0.29 -1.64 -1.72 -0.27
-1.69 -2.47 -1.39 -1.53 -0.83 -1.2 -1.74 -1.07 -1.62 -0.93 -2.17 -1.38 0.03 -0.62 -1.28 -0.27 -0.54 -0.26 -1.44 -1.07 -0.83 -1.12 3.63 0.14 -0.17 -0.04 -0.54 0.1 0.0 -0.42 0.5
Bra040138 (RPL23)
- -4.08 -1.96 -1.26 -6.48 -2.62 -4.36 -0.91 -2.77 -1.48 -3.3 -2.72 0.64 -0.59 0.17 -1.81 0.44 -0.03 -1.3 -0.67 -1.32 -1.94 3.49 0.39 0.47 0.95 0.26 -0.12 -1.78 -0.89 1.21

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.