ID | Label | % in cluster | Enrichment log2 | p-value | Corrected p-value |
---|---|---|---|---|---|
GO:0043229 | intracellular organelle | 16.39% (10/61) | 2.9 | 1e-06 | 7.3e-05 |
GO:0043226 | organelle | 16.39% (10/61) | 2.9 | 1e-06 | 7.3e-05 |
GO:0003676 | nucleic acid binding | 24.59% (15/61) | 1.91 | 6e-06 | 0.000378 |
GO:0016070 | RNA metabolic process | 11.48% (7/61) | 3.17 | 1.3e-05 | 0.000574 |
GO:0003723 | RNA binding | 13.11% (8/61) | 2.78 | 2.1e-05 | 0.000738 |
GO:0034641 | cellular nitrogen compound metabolic process | 16.39% (10/61) | 2.3 | 3.1e-05 | 0.00093 |
GO:0090304 | nucleic acid metabolic process | 11.48% (7/61) | 2.8 | 6.3e-05 | 0.00161 |
GO:0140098 | catalytic activity, acting on RNA | 8.2% (5/61) | 3.47 | 9.1e-05 | 0.002034 |
GO:0005634 | nucleus | 8.2% (5/61) | 3.37 | 0.000125 | 0.002473 |
GO:0034660 | ncRNA metabolic process | 6.56% (4/61) | 3.93 | 0.000143 | 0.002541 |
GO:0006139 | nucleobase-containing compound metabolic process | 11.48% (7/61) | 2.53 | 0.000204 | 0.003294 |
GO:0043227 | membrane-bounded organelle | 8.2% (5/61) | 3.09 | 0.000309 | 0.004229 |
GO:0043231 | intracellular membrane-bounded organelle | 8.2% (5/61) | 3.09 | 0.000309 | 0.004229 |
GO:0006725 | cellular aromatic compound metabolic process | 11.48% (7/61) | 2.38 | 0.000381 | 0.004525 |
GO:1901360 | organic cyclic compound metabolic process | 11.48% (7/61) | 2.35 | 0.000429 | 0.004774 |
GO:0046483 | heterocycle metabolic process | 11.48% (7/61) | 2.38 | 0.000379 | 0.004816 |
GO:0009059 | macromolecule biosynthetic process | 9.84% (6/61) | 2.5 | 0.000671 | 0.006634 |
GO:0140640 | catalytic activity, acting on a nucleic acid | 8.2% (5/61) | 2.86 | 0.000642 | 0.006726 |
GO:0006351 | DNA-templated transcription | 4.92% (3/61) | 4.07 | 0.000783 | 0.007333 |
GO:0043232 | intracellular non-membrane-bounded organelle | 8.2% (5/61) | 2.72 | 0.00099 | 0.008388 |
GO:0043228 | non-membrane-bounded organelle | 8.2% (5/61) | 2.72 | 0.00099 | 0.008388 |
GO:0006334 | nucleosome assembly | 3.28% (2/61) | 5.3 | 0.00119 | 0.00921 |
GO:0034728 | nucleosome organization | 3.28% (2/61) | 5.3 | 0.00119 | 0.00921 |
GO:0065004 | protein-DNA complex assembly | 3.28% (2/61) | 5.26 | 0.001261 | 0.009352 |
GO:0044271 | cellular nitrogen compound biosynthetic process | 9.84% (6/61) | 2.3 | 0.001353 | 0.009631 |
GO:0090730 | Las1 complex | 1.64% (1/61) | 9.39 | 0.001491 | 0.010209 |
GO:0019843 | rRNA binding | 3.28% (2/61) | 5.07 | 0.001645 | 0.010845 |
GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | 3.28% (2/61) | 5.03 | 0.001728 | 0.010984 |
GO:0006338 | chromatin remodeling | 3.28% (2/61) | 4.93 | 0.001988 | 0.012199 |
GO:0034062 | 5'-3' RNA polymerase activity | 3.28% (2/61) | 4.77 | 0.002459 | 0.013264 |
GO:0097747 | RNA polymerase activity | 3.28% (2/61) | 4.77 | 0.002459 | 0.013264 |
GO:0071824 | protein-DNA complex organization | 3.28% (2/61) | 4.77 | 0.002459 | 0.013264 |
GO:0032774 | RNA biosynthetic process | 4.92% (3/61) | 3.45 | 0.002661 | 0.013929 |
GO:0006325 | chromatin organization | 3.28% (2/61) | 4.8 | 0.002361 | 0.014008 |
GO:1905354 | exoribonuclease complex | 1.64% (1/61) | 8.39 | 0.00298 | 0.014338 |
GO:0008186 | ATP-dependent activity, acting on RNA | 1.64% (1/61) | 8.39 | 0.00298 | 0.014338 |
GO:0003724 | RNA helicase activity | 1.64% (1/61) | 8.39 | 0.00298 | 0.014338 |
GO:0006364 | rRNA processing | 3.28% (2/61) | 4.56 | 0.003312 | 0.015115 |
GO:0016072 | rRNA metabolic process | 3.28% (2/61) | 4.56 | 0.003312 | 0.015115 |
GO:0005840 | ribosome | 6.56% (4/61) | 2.58 | 0.004565 | 0.018898 |
GO:1905348 | endonuclease complex | 1.64% (1/61) | 7.8 | 0.004467 | 0.018933 |
GO:1902555 | endoribonuclease complex | 1.64% (1/61) | 7.8 | 0.004467 | 0.018933 |
GO:0005488 | binding | 40.98% (25/61) | 0.72 | 0.004293 | 0.019104 |
GO:1901363 | heterocyclic compound binding | 27.87% (17/61) | 0.94 | 0.005159 | 0.020406 |
GO:0097159 | organic cyclic compound binding | 27.87% (17/61) | 0.94 | 0.005159 | 0.020406 |
GO:0044249 | cellular biosynthetic process | 9.84% (6/61) | 1.88 | 0.005738 | 0.022204 |
GO:0110165 | cellular anatomical entity | 18.03% (11/61) | 1.22 | 0.006534 | 0.024747 |
GO:0006418 | tRNA aminoacylation for protein translation | 3.28% (2/61) | 4.03 | 0.006728 | 0.024952 |
GO:0043039 | tRNA aminoacylation | 3.28% (2/61) | 3.93 | 0.007711 | 0.024957 |
GO:0004812 | aminoacyl-tRNA ligase activity | 3.28% (2/61) | 3.93 | 0.007711 | 0.024957 |
GO:0043038 | amino acid activation | 3.28% (2/61) | 3.93 | 0.007711 | 0.024957 |
GO:0016875 | ligase activity, forming carbon-oxygen bonds | 3.28% (2/61) | 3.93 | 0.007711 | 0.024957 |
GO:0034470 | ncRNA processing | 3.28% (2/61) | 3.93 | 0.007711 | 0.024957 |
GO:0034654 | nucleobase-containing compound biosynthetic process | 4.92% (3/61) | 2.91 | 0.007565 | 0.026932 |
GO:0005730 | nucleolus | 1.64% (1/61) | 7.07 | 0.007434 | 0.027007 |
GO:0005575 | cellular_component | 19.67% (12/61) | 1.09 | 0.009307 | 0.029065 |
GO:1901576 | organic substance biosynthetic process | 9.84% (6/61) | 1.72 | 0.009533 | 0.029255 |
GO:0065003 | protein-containing complex assembly | 3.28% (2/61) | 3.79 | 0.009299 | 0.029559 |
GO:0000049 | tRNA binding | 1.64% (1/61) | 6.39 | 0.011869 | 0.035808 |
GO:0019438 | aromatic compound biosynthetic process | 4.92% (3/61) | 2.62 | 0.013051 | 0.038718 |
GO:0043933 | protein-containing complex organization | 3.28% (2/61) | 3.49 | 0.013732 | 0.038799 |
GO:0140101 | catalytic activity, acting on a tRNA | 3.28% (2/61) | 3.48 | 0.013952 | 0.038803 |
GO:0018130 | heterocycle biosynthetic process | 4.92% (3/61) | 2.59 | 0.013697 | 0.039323 |
GO:0022607 | cellular component assembly | 3.28% (2/61) | 3.46 | 0.014395 | 0.039421 |
GO:0006399 | tRNA metabolic process | 3.28% (2/61) | 3.51 | 0.013514 | 0.039435 |
GO:0016779 | nucleotidyltransferase activity | 3.28% (2/61) | 3.41 | 0.015301 | 0.041265 |
GO:0009058 | biosynthetic process | 9.84% (6/61) | 1.54 | 0.016667 | 0.044281 |
GO:1901362 | organic cyclic compound biosynthetic process | 4.92% (3/61) | 2.47 | 0.017195 | 0.045011 |
Clade | % in cluster | Enrichment log2 | p-value | Corrected p-value | Gene Family Method |
---|---|---|---|---|---|
No enriched Clades found |
Species | Clustering Method | Target | Jaccard index | Gene Family Method (for comparison) | Actions |
---|---|---|---|---|---|
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_7 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_13 | 0.018 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_20 | 0.013 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_37 | 0.017 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_43 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_46 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_63 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_93 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_94 | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_105 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_113 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_140 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_151 | 0.015 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_179 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_180 | 0.026 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_186 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_210 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_233 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_248 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_256 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_125 | 0.006 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_207 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_98 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_114 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_116 | 0.022 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |