Coexpression cluster: Cluster_121 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043229 intracellular organelle 16.39% (10/61) 2.9 1e-06 7.3e-05
GO:0043226 organelle 16.39% (10/61) 2.9 1e-06 7.3e-05
GO:0003676 nucleic acid binding 24.59% (15/61) 1.91 6e-06 0.000378
GO:0016070 RNA metabolic process 11.48% (7/61) 3.17 1.3e-05 0.000574
GO:0003723 RNA binding 13.11% (8/61) 2.78 2.1e-05 0.000738
GO:0034641 cellular nitrogen compound metabolic process 16.39% (10/61) 2.3 3.1e-05 0.00093
GO:0090304 nucleic acid metabolic process 11.48% (7/61) 2.8 6.3e-05 0.00161
GO:0140098 catalytic activity, acting on RNA 8.2% (5/61) 3.47 9.1e-05 0.002034
GO:0005634 nucleus 8.2% (5/61) 3.37 0.000125 0.002473
GO:0034660 ncRNA metabolic process 6.56% (4/61) 3.93 0.000143 0.002541
GO:0006139 nucleobase-containing compound metabolic process 11.48% (7/61) 2.53 0.000204 0.003294
GO:0043227 membrane-bounded organelle 8.2% (5/61) 3.09 0.000309 0.004229
GO:0043231 intracellular membrane-bounded organelle 8.2% (5/61) 3.09 0.000309 0.004229
GO:0006725 cellular aromatic compound metabolic process 11.48% (7/61) 2.38 0.000381 0.004525
GO:1901360 organic cyclic compound metabolic process 11.48% (7/61) 2.35 0.000429 0.004774
GO:0046483 heterocycle metabolic process 11.48% (7/61) 2.38 0.000379 0.004816
GO:0009059 macromolecule biosynthetic process 9.84% (6/61) 2.5 0.000671 0.006634
GO:0140640 catalytic activity, acting on a nucleic acid 8.2% (5/61) 2.86 0.000642 0.006726
GO:0006351 DNA-templated transcription 4.92% (3/61) 4.07 0.000783 0.007333
GO:0043232 intracellular non-membrane-bounded organelle 8.2% (5/61) 2.72 0.00099 0.008388
GO:0043228 non-membrane-bounded organelle 8.2% (5/61) 2.72 0.00099 0.008388
GO:0006334 nucleosome assembly 3.28% (2/61) 5.3 0.00119 0.00921
GO:0034728 nucleosome organization 3.28% (2/61) 5.3 0.00119 0.00921
GO:0065004 protein-DNA complex assembly 3.28% (2/61) 5.26 0.001261 0.009352
GO:0044271 cellular nitrogen compound biosynthetic process 9.84% (6/61) 2.3 0.001353 0.009631
GO:0090730 Las1 complex 1.64% (1/61) 9.39 0.001491 0.010209
GO:0019843 rRNA binding 3.28% (2/61) 5.07 0.001645 0.010845
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.28% (2/61) 5.03 0.001728 0.010984
GO:0006338 chromatin remodeling 3.28% (2/61) 4.93 0.001988 0.012199
GO:0034062 5'-3' RNA polymerase activity 3.28% (2/61) 4.77 0.002459 0.013264
GO:0097747 RNA polymerase activity 3.28% (2/61) 4.77 0.002459 0.013264
GO:0071824 protein-DNA complex organization 3.28% (2/61) 4.77 0.002459 0.013264
GO:0032774 RNA biosynthetic process 4.92% (3/61) 3.45 0.002661 0.013929
GO:0006325 chromatin organization 3.28% (2/61) 4.8 0.002361 0.014008
GO:1905354 exoribonuclease complex 1.64% (1/61) 8.39 0.00298 0.014338
GO:0008186 ATP-dependent activity, acting on RNA 1.64% (1/61) 8.39 0.00298 0.014338
GO:0003724 RNA helicase activity 1.64% (1/61) 8.39 0.00298 0.014338
GO:0006364 rRNA processing 3.28% (2/61) 4.56 0.003312 0.015115
GO:0016072 rRNA metabolic process 3.28% (2/61) 4.56 0.003312 0.015115
GO:0005840 ribosome 6.56% (4/61) 2.58 0.004565 0.018898
GO:1905348 endonuclease complex 1.64% (1/61) 7.8 0.004467 0.018933
GO:1902555 endoribonuclease complex 1.64% (1/61) 7.8 0.004467 0.018933
GO:0005488 binding 40.98% (25/61) 0.72 0.004293 0.019104
GO:1901363 heterocyclic compound binding 27.87% (17/61) 0.94 0.005159 0.020406
GO:0097159 organic cyclic compound binding 27.87% (17/61) 0.94 0.005159 0.020406
GO:0044249 cellular biosynthetic process 9.84% (6/61) 1.88 0.005738 0.022204
GO:0110165 cellular anatomical entity 18.03% (11/61) 1.22 0.006534 0.024747
GO:0006418 tRNA aminoacylation for protein translation 3.28% (2/61) 4.03 0.006728 0.024952
GO:0043039 tRNA aminoacylation 3.28% (2/61) 3.93 0.007711 0.024957
GO:0004812 aminoacyl-tRNA ligase activity 3.28% (2/61) 3.93 0.007711 0.024957
GO:0043038 amino acid activation 3.28% (2/61) 3.93 0.007711 0.024957
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.28% (2/61) 3.93 0.007711 0.024957
GO:0034470 ncRNA processing 3.28% (2/61) 3.93 0.007711 0.024957
GO:0034654 nucleobase-containing compound biosynthetic process 4.92% (3/61) 2.91 0.007565 0.026932
GO:0005730 nucleolus 1.64% (1/61) 7.07 0.007434 0.027007
GO:0005575 cellular_component 19.67% (12/61) 1.09 0.009307 0.029065
GO:1901576 organic substance biosynthetic process 9.84% (6/61) 1.72 0.009533 0.029255
GO:0065003 protein-containing complex assembly 3.28% (2/61) 3.79 0.009299 0.029559
GO:0000049 tRNA binding 1.64% (1/61) 6.39 0.011869 0.035808
GO:0019438 aromatic compound biosynthetic process 4.92% (3/61) 2.62 0.013051 0.038718
GO:0043933 protein-containing complex organization 3.28% (2/61) 3.49 0.013732 0.038799
GO:0140101 catalytic activity, acting on a tRNA 3.28% (2/61) 3.48 0.013952 0.038803
GO:0018130 heterocycle biosynthetic process 4.92% (3/61) 2.59 0.013697 0.039323
GO:0022607 cellular component assembly 3.28% (2/61) 3.46 0.014395 0.039421
GO:0006399 tRNA metabolic process 3.28% (2/61) 3.51 0.013514 0.039435
GO:0016779 nucleotidyltransferase activity 3.28% (2/61) 3.41 0.015301 0.041265
GO:0009058 biosynthetic process 9.84% (6/61) 1.54 0.016667 0.044281
GO:1901362 organic cyclic compound biosynthetic process 4.92% (3/61) 2.47 0.017195 0.045011
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_7 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_140 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_233 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_248 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_256 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_125 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_114 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (61) (download table)

InterPro Domains

GO Terms

Family Terms