Coexpression cluster: Cluster_37 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051020 GTPase binding 4.41% (3/68) 6.06 1.2e-05 0.001199
GO:0031267 small GTPase binding 4.41% (3/68) 6.06 1.2e-05 0.001199
GO:0003676 nucleic acid binding 20.59% (14/68) 1.66 0.000106 0.006811
GO:0016070 RNA metabolic process 8.82% (6/68) 2.79 0.000238 0.007603
GO:0019899 enzyme binding 4.41% (3/68) 4.84 0.000162 0.007798
GO:0005634 nucleus 7.35% (5/68) 3.21 0.000209 0.008043
GO:0022613 ribonucleoprotein complex biogenesis 2.94% (2/68) 6.06 0.00041 0.008736
GO:0042254 ribosome biogenesis 2.94% (2/68) 6.15 0.000364 0.008746
GO:0003723 RNA binding 10.29% (7/68) 2.43 0.00032 0.008787
GO:0043231 intracellular membrane-bounded organelle 7.35% (5/68) 2.93 0.000512 0.00894
GO:0043227 membrane-bounded organelle 7.35% (5/68) 2.93 0.000512 0.00894
GO:0043229 intracellular organelle 10.29% (7/68) 2.23 0.000732 0.010818
GO:0043226 organelle 10.29% (7/68) 2.23 0.000732 0.010818
GO:0090304 nucleic acid metabolic process 8.82% (6/68) 2.43 0.000887 0.01217
GO:0016741 transferase activity, transferring one-carbon groups 5.88% (4/68) 2.97 0.001737 0.019619
GO:0008168 methyltransferase activity 5.88% (4/68) 3.02 0.00154 0.019706
GO:0044085 cellular component biogenesis 2.94% (2/68) 5.06 0.001654 0.019847
GO:0034641 cellular nitrogen compound metabolic process 11.76% (8/68) 1.82 0.001871 0.019962
GO:0006886 intracellular protein transport 4.41% (3/68) 3.55 0.002192 0.022153
GO:0006139 nucleobase-containing compound metabolic process 8.82% (6/68) 2.15 0.002314 0.022217
GO:0080009 mRNA methylation 1.47% (1/68) 8.23 0.003322 0.028993
GO:0016556 mRNA modification 1.47% (1/68) 8.23 0.003322 0.028993
GO:0045184 establishment of protein localization 4.41% (3/68) 3.04 0.005874 0.029678
GO:0008104 protein localization 4.41% (3/68) 3.04 0.005874 0.029678
GO:0033036 macromolecule localization 4.41% (3/68) 3.04 0.005874 0.029678
GO:0070727 cellular macromolecule localization 4.41% (3/68) 3.04 0.005874 0.029678
GO:0006725 cellular aromatic compound metabolic process 8.82% (6/68) 2.0 0.003858 0.030865
GO:0140223 general transcription initiation factor activity 1.47% (1/68) 7.23 0.006633 0.031063
GO:0001181 RNA polymerase I general transcription initiation factor activity 1.47% (1/68) 7.23 0.006633 0.031063
GO:0006361 transcription initiation at RNA polymerase I promoter 1.47% (1/68) 7.23 0.006633 0.031063
GO:0050684 regulation of mRNA processing 1.47% (1/68) 7.65 0.004979 0.031866
GO:0048024 regulation of mRNA splicing, via spliceosome 1.47% (1/68) 7.65 0.004979 0.031866
GO:1903311 regulation of mRNA metabolic process 1.47% (1/68) 7.65 0.004979 0.031866
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 1.47% (1/68) 7.65 0.004979 0.031866
GO:0043484 regulation of RNA splicing 1.47% (1/68) 7.65 0.004979 0.031866
GO:0046483 heterocycle metabolic process 8.82% (6/68) 2.0 0.003837 0.032034
GO:0046907 intracellular transport 4.41% (3/68) 3.06 0.005727 0.032341
GO:0051649 establishment of localization in cell 4.41% (3/68) 3.06 0.005727 0.032341
GO:1901360 organic cyclic compound metabolic process 8.82% (6/68) 1.97 0.004246 0.03261
GO:0006396 RNA processing 4.41% (3/68) 3.06 0.005654 0.033927
GO:0015031 protein transport 4.41% (3/68) 3.08 0.005511 0.034133
GO:0006529 asparagine biosynthetic process 1.47% (1/68) 6.91 0.008285 0.036152
GO:0006528 asparagine metabolic process 1.47% (1/68) 6.91 0.008285 0.036152
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.47% (1/68) 6.91 0.008285 0.036152
GO:0071705 nitrogen compound transport 4.41% (3/68) 2.72 0.010814 0.04614
GO:0051641 cellular localization 4.41% (3/68) 2.7 0.011244 0.04693
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_7 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_121 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.025 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_161 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_225 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_238 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_245 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_274 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_279 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_286 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_61 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_229 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_2 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_163 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_31 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (68) (download table)

InterPro Domains

GO Terms

Family Terms