Coexpression cluster: Cluster_150 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 27.22% (46/169) 2.41 0.0 0.0
GO:0016070 RNA metabolic process 14.79% (25/169) 3.68 0.0 0.0
GO:0090304 nucleic acid metabolic process 15.98% (27/169) 3.38 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 13.02% (22/169) 3.72 0.0 0.0
GO:0046483 heterocycle metabolic process 17.16% (29/169) 3.0 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 16.57% (28/169) 3.08 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 17.16% (29/169) 3.01 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 17.16% (29/169) 2.95 0.0 0.0
GO:0003723 RNA binding 15.38% (26/169) 3.17 0.0 0.0
GO:0005488 binding 50.89% (86/169) 1.18 0.0 0.0
GO:0097159 organic cyclic compound binding 38.46% (65/169) 1.48 0.0 0.0
GO:1901363 heterocyclic compound binding 38.46% (65/169) 1.48 0.0 0.0
GO:0034660 ncRNA metabolic process 8.28% (14/169) 4.44 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 17.75% (30/169) 2.53 0.0 0.0
GO:0006396 RNA processing 7.69% (13/169) 4.08 0.0 0.0
GO:0004386 helicase activity 4.73% (8/169) 5.09 0.0 0.0
GO:0016072 rRNA metabolic process 4.14% (7/169) 5.33 0.0 0.0
GO:0006364 rRNA processing 4.14% (7/169) 5.33 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 7.1% (12/169) 3.53 0.0 0.0
GO:0034470 ncRNA processing 4.73% (8/169) 4.7 0.0 0.0
GO:0003674 molecular_function 59.76% (101/169) 0.7 0.0 0.0
GO:0006807 nitrogen compound metabolic process 23.08% (39/169) 1.24 0.0 4e-06
GO:0043170 macromolecule metabolic process 21.89% (37/169) 1.29 0.0 5e-06
GO:0035639 purine ribonucleoside triphosphate binding 16.57% (28/169) 1.51 1e-06 7e-06
GO:0006399 tRNA metabolic process 4.14% (7/169) 3.9 0.0 8e-06
GO:0006418 tRNA aminoacylation for protein translation 3.55% (6/169) 4.22 1e-06 1.3e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.55% (6/169) 4.15 1e-06 1.5e-05
GO:0043038 amino acid activation 3.55% (6/169) 4.15 1e-06 1.5e-05
GO:0043039 tRNA aminoacylation 3.55% (6/169) 4.15 1e-06 1.5e-05
GO:0004812 aminoacyl-tRNA ligase activity 3.55% (6/169) 4.15 1e-06 1.5e-05
GO:0005524 ATP binding 14.79% (25/169) 1.53 2e-06 2.2e-05
GO:0016874 ligase activity 4.14% (7/169) 3.56 2e-06 2.8e-05
GO:0044237 cellular metabolic process 20.12% (34/169) 1.17 6e-06 6.4e-05
GO:0140101 catalytic activity, acting on a tRNA 3.55% (6/169) 3.76 6e-06 6.5e-05
GO:0032555 purine ribonucleotide binding 16.57% (28/169) 1.3 9e-06 9.5e-05
GO:0032553 ribonucleotide binding 16.57% (28/169) 1.29 1e-05 0.000104
GO:0097367 carbohydrate derivative binding 16.57% (28/169) 1.28 1.1e-05 0.000109
GO:1990904 ribonucleoprotein complex 2.37% (4/169) 4.56 2.5e-05 0.000235
GO:0017076 purine nucleotide binding 16.57% (28/169) 1.22 2.4e-05 0.000235
GO:0032559 adenyl ribonucleotide binding 14.79% (25/169) 1.29 3.4e-05 0.000306
GO:0140513 nuclear protein-containing complex 2.96% (5/169) 3.69 4.5e-05 0.000401
GO:0009987 cellular process 25.44% (43/169) 0.87 4.8e-05 0.000418
GO:0000166 nucleotide binding 16.57% (28/169) 1.15 5.3e-05 0.000443
GO:1901265 nucleoside phosphate binding 16.57% (28/169) 1.15 5.3e-05 0.000443
GO:1905354 exoribonuclease complex 1.18% (2/169) 7.26 5.6e-05 0.000455
GO:0043168 anion binding 16.57% (28/169) 1.15 5.7e-05 0.000456
GO:0140657 ATP-dependent activity 5.92% (10/169) 2.22 6.5e-05 0.000482
GO:0044238 primary metabolic process 22.49% (38/169) 0.93 6.2e-05 0.000484
GO:0071704 organic substance metabolic process 23.08% (39/169) 0.91 6.4e-05 0.000486
GO:0030554 adenyl nucleotide binding 14.79% (25/169) 1.2 8.5e-05 0.000623
GO:0036094 small molecule binding 16.57% (28/169) 1.11 9.6e-05 0.000686
GO:0006351 DNA-templated transcription 2.96% (5/169) 3.39 0.000123 0.000866
GO:0051020 GTPase binding 1.78% (3/169) 4.85 0.000152 0.001011
GO:0031267 small GTPase binding 1.78% (3/169) 4.85 0.000152 0.001011
GO:0008152 metabolic process 23.67% (40/169) 0.84 0.000157 0.001025
GO:0006520 amino acid metabolic process 3.55% (6/169) 2.92 0.000152 0.001046
GO:0043167 ion binding 20.71% (35/169) 0.86 0.000359 0.002297
GO:0019438 aromatic compound biosynthetic process 4.14% (7/169) 2.36 0.00048 0.003023
GO:0018130 heterocycle biosynthetic process 4.14% (7/169) 2.32 0.000547 0.003385
GO:0005634 nucleus 3.55% (6/169) 2.57 0.000568 0.003456
GO:0032991 protein-containing complex 5.92% (10/169) 1.81 0.000638 0.003819
GO:0032774 RNA biosynthetic process 2.96% (5/169) 2.8 0.000798 0.004699
GO:1901362 organic cyclic compound biosynthetic process 4.14% (7/169) 2.16 0.001049 0.00608
GO:0034654 nucleobase-containing compound biosynthetic process 3.55% (6/169) 2.38 0.001106 0.006309
GO:0070646 protein modification by small protein removal 1.78% (3/169) 3.85 0.001206 0.006669
GO:0016579 protein deubiquitination 1.78% (3/169) 3.85 0.001206 0.006669
GO:0019899 enzyme binding 1.78% (3/169) 3.82 0.001281 0.006976
GO:0043227 membrane-bounded organelle 3.55% (6/169) 2.32 0.001386 0.007334
GO:0043231 intracellular membrane-bounded organelle 3.55% (6/169) 2.32 0.001386 0.007334
GO:0005643 nuclear pore 1.18% (2/169) 5.15 0.001417 0.007391
GO:0004843 cysteine-type deubiquitinase activity 1.78% (3/169) 3.73 0.001522 0.007607
GO:0101005 deubiquitinase activity 1.78% (3/169) 3.73 0.001522 0.007607
GO:0019783 ubiquitin-like protein peptidase activity 1.78% (3/169) 3.73 0.001522 0.007607
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.78% (3/169) 3.62 0.001884 0.009294
GO:0008094 ATP-dependent activity, acting on DNA 1.78% (3/169) 3.48 0.002522 0.012276
GO:0097747 RNA polymerase activity 1.78% (3/169) 3.45 0.00264 0.012355
GO:0034062 5'-3' RNA polymerase activity 1.78% (3/169) 3.45 0.00264 0.012355
GO:0016779 nucleotidyltransferase activity 2.37% (4/169) 2.81 0.002622 0.012594
GO:0043436 oxoacid metabolic process 3.55% (6/169) 2.11 0.002896 0.013214
GO:0019752 carboxylic acid metabolic process 3.55% (6/169) 2.11 0.002896 0.013214
GO:0006082 organic acid metabolic process 3.55% (6/169) 2.1 0.002941 0.013252
GO:0008168 methyltransferase activity 2.96% (5/169) 2.34 0.003289 0.014639
GO:0003824 catalytic activity 27.22% (46/169) 0.55 0.003513 0.015447
GO:0042274 ribosomal small subunit biogenesis 0.59% (1/169) 7.85 0.004343 0.015696
GO:0016435 rRNA (guanine) methyltransferase activity 0.59% (1/169) 7.85 0.004343 0.015696
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 0.59% (1/169) 7.85 0.004343 0.015696
GO:0034511 U3 snoRNA binding 0.59% (1/169) 7.85 0.004343 0.015696
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor 0.59% (1/169) 7.85 0.004343 0.015696
GO:0034457 Mpp10 complex 0.59% (1/169) 7.85 0.004343 0.015696
GO:0006784 heme A biosynthetic process 0.59% (1/169) 7.85 0.004343 0.015696
GO:0046160 heme a metabolic process 0.59% (1/169) 7.85 0.004343 0.015696
GO:0004826 phenylalanine-tRNA ligase activity 0.59% (1/169) 7.85 0.004343 0.015696
GO:0036265 RNA (guanine-N7)-methylation 0.59% (1/169) 7.85 0.004343 0.015696
GO:0070476 rRNA (guanine-N7)-methylation 0.59% (1/169) 7.85 0.004343 0.015696
GO:0006432 phenylalanyl-tRNA aminoacylation 0.59% (1/169) 7.85 0.004343 0.015696
GO:0140664 ATP-dependent DNA damage sensor activity 0.59% (1/169) 7.85 0.004343 0.015696
GO:0140612 DNA damage sensor activity 0.59% (1/169) 7.85 0.004343 0.015696
GO:0090730 Las1 complex 0.59% (1/169) 7.85 0.004343 0.015696
GO:0015031 protein transport 2.96% (5/169) 2.21 0.004691 0.016786
GO:0016741 transferase activity, transferring one-carbon groups 2.96% (5/169) 2.27 0.003945 0.017143
GO:0070727 cellular macromolecule localization 2.96% (5/169) 2.19 0.005015 0.017269
GO:0033036 macromolecule localization 2.96% (5/169) 2.19 0.005015 0.017269
GO:0045184 establishment of protein localization 2.96% (5/169) 2.19 0.005015 0.017269
GO:0008104 protein localization 2.96% (5/169) 2.19 0.005015 0.017269
GO:0008150 biological_process 30.77% (52/169) 0.5 0.00405 0.017393
GO:0005515 protein binding 12.43% (21/169) 0.9 0.004337 0.018408
GO:0008173 RNA methyltransferase activity 1.18% (2/169) 4.15 0.005691 0.019415
GO:0000413 protein peptidyl-prolyl isomerization 1.18% (2/169) 4.04 0.006582 0.022041
GO:0018208 peptidyl-proline modification 1.18% (2/169) 4.04 0.006582 0.022041
GO:0046037 GMP metabolic process 0.59% (1/169) 6.85 0.008668 0.026587
GO:0042256 cytosolic ribosome assembly 0.59% (1/169) 6.85 0.008668 0.026587
GO:0000178 exosome (RNase complex) 0.59% (1/169) 6.85 0.008668 0.026587
GO:0006177 GMP biosynthetic process 0.59% (1/169) 6.85 0.008668 0.026587
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.59% (1/169) 6.85 0.008668 0.026587
GO:0006425 glutaminyl-tRNA aminoacylation 0.59% (1/169) 6.85 0.008668 0.026587
GO:0006303 double-strand break repair via nonhomologous end joining 0.59% (1/169) 6.85 0.008668 0.026587
GO:0004819 glutamine-tRNA ligase activity 0.59% (1/169) 6.85 0.008668 0.026587
GO:0042255 ribosome assembly 0.59% (1/169) 6.85 0.008668 0.026587
GO:0044281 small molecule metabolic process 4.14% (7/169) 1.61 0.008642 0.028676
GO:0006886 intracellular protein transport 2.37% (4/169) 2.28 0.009501 0.028899
GO:0022607 cellular component assembly 1.78% (3/169) 2.75 0.010365 0.031009
GO:0140097 catalytic activity, acting on DNA 1.78% (3/169) 2.75 0.010365 0.031009
GO:0043229 intracellular organelle 4.73% (8/169) 1.42 0.01064 0.03107
GO:0043226 organelle 4.73% (8/169) 1.42 0.01064 0.03107
GO:0051641 cellular localization 2.96% (5/169) 1.93 0.010512 0.031193
GO:0071705 nitrogen compound transport 2.96% (5/169) 1.91 0.011079 0.031841
GO:0044271 cellular nitrogen compound biosynthetic process 4.73% (8/169) 1.41 0.011078 0.032092
GO:0071702 organic substance transport 2.96% (5/169) 1.9 0.011517 0.032843
GO:0005685 U1 snRNP 0.59% (1/169) 6.26 0.012974 0.035875
GO:0006376 mRNA splice site recognition 0.59% (1/169) 6.26 0.012974 0.035875
GO:1905348 endonuclease complex 0.59% (1/169) 6.26 0.012974 0.035875
GO:1902555 endoribonuclease complex 0.59% (1/169) 6.26 0.012974 0.035875
GO:0005575 cellular_component 13.02% (22/169) 0.72 0.01391 0.038174
GO:0017111 ribonucleoside triphosphate phosphatase activity 2.96% (5/169) 1.79 0.015641 0.042605
GO:0030515 snoRNA binding 0.59% (1/169) 5.85 0.017261 0.045988
GO:0006438 valyl-tRNA aminoacylation 0.59% (1/169) 5.85 0.017261 0.045988
GO:0004832 valine-tRNA ligase activity 0.59% (1/169) 5.85 0.017261 0.045988
GO:0005737 cytoplasm 1.78% (3/169) 2.42 0.018881 0.04994
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_7 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_14 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_22 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_49 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_60 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_62 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_64 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_67 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_83 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_132 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_193 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_230 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_250 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_2 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (169) (download table)

InterPro Domains

GO Terms

Family Terms