Coexpression cluster: Cluster_132 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 19.25% (36/187) 1.91 0.0 0.0
GO:0003723 RNA binding 11.23% (21/187) 2.72 0.0 0.0
GO:0005488 binding 41.71% (78/187) 0.9 0.0 0.0
GO:0097159 organic cyclic compound binding 29.41% (55/187) 1.09 0.0 2e-06
GO:1901363 heterocyclic compound binding 29.41% (55/187) 1.09 0.0 2e-06
GO:0016070 RNA metabolic process 6.42% (12/187) 2.47 2e-06 0.000135
GO:0090304 nucleic acid metabolic process 6.95% (13/187) 2.17 7e-06 0.000406
GO:0003674 molecular_function 52.41% (98/187) 0.51 1e-05 0.000465
GO:0006139 nucleobase-containing compound metabolic process 7.49% (14/187) 1.93 2.2e-05 0.000916
GO:0006487 protein N-linked glycosylation 1.6% (3/187) 5.38 4.8e-05 0.001805
GO:0046483 heterocycle metabolic process 7.49% (14/187) 1.8 5.8e-05 0.001819
GO:0006725 cellular aromatic compound metabolic process 7.49% (14/187) 1.81 5.5e-05 0.001885
GO:0016192 vesicle-mediated transport 3.74% (7/187) 2.83 6.5e-05 0.001886
GO:0034660 ncRNA metabolic process 3.21% (6/187) 3.07 8.8e-05 0.002232
GO:1901360 organic cyclic compound metabolic process 7.49% (14/187) 1.75 8.6e-05 0.002319
GO:0043413 macromolecule glycosylation 2.14% (4/187) 3.89 0.000156 0.00348
GO:0006486 protein glycosylation 2.14% (4/187) 3.89 0.000156 0.00348
GO:0006399 tRNA metabolic process 2.67% (5/187) 3.27 0.000181 0.003821
GO:0006396 RNA processing 3.21% (6/187) 2.82 0.000226 0.004077
GO:0035639 purine ribonucleoside triphosphate binding 12.83% (24/187) 1.15 0.000224 0.004244
GO:0070085 glycosylation 2.14% (4/187) 3.77 0.000218 0.004341
GO:0008250 oligosaccharyltransferase complex 1.07% (2/187) 5.89 0.000475 0.008181
GO:0098796 membrane protein complex 3.74% (7/187) 2.26 0.00071 0.011698
GO:0030117 membrane coat 2.14% (4/187) 3.24 0.000879 0.013886
GO:0051649 establishment of localization in cell 3.21% (6/187) 2.36 0.001194 0.017402
GO:0046907 intracellular transport 3.21% (6/187) 2.36 0.001194 0.017402
GO:0032991 protein-containing complex 5.35% (10/187) 1.66 0.001379 0.019359
GO:0005524 ATP binding 10.7% (20/187) 1.06 0.001557 0.02107
GO:0032555 purine ribonucleotide binding 12.83% (24/187) 0.93 0.001844 0.024101
GO:0031090 organelle membrane 1.6% (3/187) 3.56 0.002145 0.02463
GO:0034641 cellular nitrogen compound metabolic process 7.49% (14/187) 1.29 0.002016 0.024649
GO:0097367 carbohydrate derivative binding 12.83% (24/187) 0.91 0.002108 0.024972
GO:0006886 intracellular protein transport 2.67% (5/187) 2.46 0.002271 0.025313
GO:0032553 ribonucleotide binding 12.83% (24/187) 0.92 0.002007 0.025355
GO:0051641 cellular localization 3.21% (6/187) 2.05 0.003533 0.038262
GO:0017076 purine nucleotide binding 12.83% (24/187) 0.85 0.003695 0.038897
GO:0000176 nuclear exosome (RNase complex) 0.53% (1/187) 7.7 0.004806 0.039597
GO:0008452 RNA ligase activity 0.53% (1/187) 7.7 0.004806 0.039597
GO:0042030 ATPase inhibitor activity 0.53% (1/187) 7.7 0.004806 0.039597
GO:0018279 protein N-linked glycosylation via asparagine 0.53% (1/187) 7.7 0.004806 0.039597
GO:0001181 RNA polymerase I general transcription initiation factor activity 0.53% (1/187) 7.7 0.004806 0.039597
GO:0006361 transcription initiation at RNA polymerase I promoter 0.53% (1/187) 7.7 0.004806 0.039597
GO:0140223 general transcription initiation factor activity 0.53% (1/187) 7.7 0.004806 0.039597
GO:0003972 RNA ligase (ATP) activity 0.53% (1/187) 7.7 0.004806 0.039597
GO:0034227 tRNA thio-modification 0.53% (1/187) 7.7 0.004806 0.039597
GO:0034470 ncRNA processing 1.6% (3/187) 3.14 0.004912 0.039611
GO:0008135 translation factor activity, RNA binding 1.6% (3/187) 2.96 0.006843 0.039897
GO:0090079 translation regulator activity, nucleic acid binding 1.6% (3/187) 2.96 0.006843 0.039897
GO:0045182 translation regulator activity 1.6% (3/187) 2.96 0.006843 0.039897
GO:0061659 ubiquitin-like protein ligase activity 1.07% (2/187) 4.06 0.006409 0.040483
GO:0030127 COPII vesicle coat 1.07% (2/187) 4.06 0.006409 0.040483
GO:0043167 ion binding 17.65% (33/187) 0.62 0.007657 0.040872
GO:0015031 protein transport 2.67% (5/187) 2.07 0.007141 0.041006
GO:0070727 cellular macromolecule localization 2.67% (5/187) 2.05 0.007624 0.041276
GO:0033036 macromolecule localization 2.67% (5/187) 2.05 0.007624 0.041276
GO:0045184 establishment of protein localization 2.67% (5/187) 2.05 0.007624 0.041276
GO:0008104 protein localization 2.67% (5/187) 2.05 0.007624 0.041276
GO:0043168 anion binding 12.83% (24/187) 0.78 0.006667 0.041425
GO:0005515 protein binding 11.76% (22/187) 0.82 0.006818 0.041679
GO:0043039 tRNA aminoacylation 1.6% (3/187) 3.0 0.00638 0.041692
GO:0043038 amino acid activation 1.6% (3/187) 3.0 0.00638 0.041692
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.6% (3/187) 3.0 0.00638 0.041692
GO:0004812 aminoacyl-tRNA ligase activity 1.6% (3/187) 3.0 0.00638 0.041692
GO:0006418 tRNA aminoacylation for protein translation 1.6% (3/187) 3.08 0.005513 0.043531
GO:0032780 negative regulation of ATP-dependent activity 0.53% (1/187) 6.7 0.009589 0.043786
GO:0007031 peroxisome organization 0.53% (1/187) 6.7 0.009589 0.043786
GO:0006370 7-methylguanosine mRNA capping 0.53% (1/187) 6.7 0.009589 0.043786
GO:0043462 regulation of ATP-dependent activity 0.53% (1/187) 6.7 0.009589 0.043786
GO:0000178 exosome (RNase complex) 0.53% (1/187) 6.7 0.009589 0.043786
GO:0004484 mRNA guanylyltransferase activity 0.53% (1/187) 6.7 0.009589 0.043786
GO:0061630 ubiquitin protein ligase activity 1.07% (2/187) 4.12 0.005915 0.043955
GO:0140534 endoplasmic reticulum protein-containing complex 1.07% (2/187) 4.12 0.005915 0.043955
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.07% (2/187) 3.75 0.009748 0.043983
GO:1901265 nucleoside phosphate binding 12.83% (24/187) 0.79 0.006346 0.044537
GO:0000166 nucleotide binding 12.83% (24/187) 0.79 0.006346 0.044537
GO:0032559 adenyl ribonucleotide binding 10.7% (20/187) 0.82 0.010054 0.044828
GO:0009987 cellular process 20.86% (39/187) 0.58 0.005814 0.044967
GO:0008270 zinc ion binding 3.74% (7/187) 1.61 0.008573 0.045128
GO:0016874 ligase activity 2.14% (4/187) 2.6 0.004415 0.045225
GO:0140098 catalytic activity, acting on RNA 2.67% (5/187) 2.12 0.00624 0.045481
GO:0140513 nuclear protein-containing complex 1.6% (3/187) 2.81 0.009166 0.045708
GO:0098588 bounding membrane of organelle 1.07% (2/187) 3.79 0.009148 0.046228
GO:0008033 tRNA processing 1.07% (2/187) 3.79 0.009148 0.046228
GO:0036094 small molecule binding 12.83% (24/187) 0.74 0.009465 0.046589
GO:0043170 macromolecule metabolic process 14.44% (27/187) 0.69 0.009143 0.047468
GO:0140640 catalytic activity, acting on a nucleic acid 3.21% (6/187) 1.7 0.010966 0.048327
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_216 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_22 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_29 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_53 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_83 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_97 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_147 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_149 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_193 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_228 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_229 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_230 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_242 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_268 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_273 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (187) (download table)

InterPro Domains

GO Terms

Family Terms