Coexpression cluster: Cluster_133 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097159 organic cyclic compound binding 36.54% (19/52) 1.41 3.4e-05 0.001863
GO:1901363 heterocyclic compound binding 36.54% (19/52) 1.41 3.4e-05 0.001863
GO:0003676 nucleic acid binding 23.08% (12/52) 2.17 1e-05 0.002103
GO:0006082 organic acid metabolic process 9.62% (5/52) 3.54 7.1e-05 0.002245
GO:0043436 oxoacid metabolic process 9.62% (5/52) 3.54 7e-05 0.002581
GO:0019752 carboxylic acid metabolic process 9.62% (5/52) 3.54 7e-05 0.002581
GO:0006520 amino acid metabolic process 7.69% (4/52) 4.04 0.000105 0.002906
GO:0003723 RNA binding 13.46% (7/52) 2.98 2.8e-05 0.003131
GO:0005488 binding 44.23% (23/52) 0.98 0.000385 0.009451
GO:0044281 small molecule metabolic process 9.62% (5/52) 2.82 0.0007 0.015464
GO:0016874 ligase activity 5.77% (3/52) 4.03 0.000832 0.016711
GO:0009317 acetyl-CoA carboxylase complex 1.92% (1/52) 9.55 0.001336 0.01969
GO:0043190 ATP-binding cassette (ABC) transporter complex 1.92% (1/52) 9.55 0.001336 0.01969
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.92% (1/52) 9.55 0.001336 0.01969
GO:0098533 ATPase dependent transmembrane transport complex 1.92% (1/52) 9.55 0.001336 0.01969
GO:0003674 molecular_function 57.69% (30/52) 0.65 0.001762 0.024335
GO:0019238 cyclohydrolase activity 1.92% (1/52) 8.55 0.002671 0.034724
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.92% (1/52) 7.55 0.005335 0.040658
GO:0045182 translation regulator activity 3.85% (2/52) 4.23 0.005179 0.040874
GO:0090079 translation regulator activity, nucleic acid binding 3.85% (2/52) 4.23 0.005179 0.040874
GO:0008135 translation factor activity, RNA binding 3.85% (2/52) 4.23 0.005179 0.040874
GO:0004812 aminoacyl-tRNA ligase activity 3.85% (2/52) 4.26 0.00493 0.043579
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.85% (2/52) 4.26 0.00493 0.043579
GO:0043039 tRNA aminoacylation 3.85% (2/52) 4.26 0.00493 0.043579
GO:0043038 amino acid activation 3.85% (2/52) 4.26 0.00493 0.043579
GO:0003989 acetyl-CoA carboxylase activity 1.92% (1/52) 7.96 0.004004 0.044244
GO:0016885 ligase activity, forming carbon-carbon bonds 1.92% (1/52) 7.96 0.004004 0.044244
GO:0016421 CoA carboxylase activity 1.92% (1/52) 7.96 0.004004 0.044244
GO:0042803 protein homodimerization activity 1.92% (1/52) 7.23 0.006665 0.044633
GO:0000774 adenyl-nucleotide exchange factor activity 1.92% (1/52) 7.23 0.006665 0.044633
GO:0000049 tRNA binding 1.92% (1/52) 7.23 0.006665 0.044633
GO:0042802 identical protein binding 1.92% (1/52) 7.23 0.006665 0.044633
GO:0006415 translational termination 1.92% (1/52) 6.74 0.009318 0.044768
GO:0032984 protein-containing complex disassembly 1.92% (1/52) 6.74 0.009318 0.044768
GO:0022411 cellular component disassembly 1.92% (1/52) 6.74 0.009318 0.044768
GO:0006401 RNA catabolic process 1.92% (1/52) 6.74 0.009318 0.044768
GO:0008079 translation termination factor activity 1.92% (1/52) 6.74 0.009318 0.044768
GO:0003747 translation release factor activity 1.92% (1/52) 6.74 0.009318 0.044768
GO:0050667 homocysteine metabolic process 1.92% (1/52) 6.96 0.007992 0.046481
GO:0006402 mRNA catabolic process 1.92% (1/52) 6.96 0.007992 0.046481
GO:0019346 transsulfuration 1.92% (1/52) 6.96 0.007992 0.046481
GO:0000956 nuclear-transcribed mRNA catabolic process 1.92% (1/52) 6.96 0.007992 0.046481
GO:0009092 homoserine metabolic process 1.92% (1/52) 6.96 0.007992 0.046481
GO:0006418 tRNA aminoacylation for protein translation 3.85% (2/52) 4.34 0.004449 0.046821
GO:0140101 catalytic activity, acting on a tRNA 3.85% (2/52) 3.87 0.008285 0.046949
GO:0070006 metalloaminopeptidase activity 1.92% (1/52) 6.55 0.010642 0.049
GO:0016743 carboxyl- or carbamoyltransferase activity 1.92% (1/52) 6.55 0.010642 0.049
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_242 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_257 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_14 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_23 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_59 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_62 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_88 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_91 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_95 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_117 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_149 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_176 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_210 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_242 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_250 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_118 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_71 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms