Coexpression cluster: Cluster_122 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 46.36% (121/261) 1.28 0.0 0.0
GO:0003674 molecular_function 57.85% (151/261) 0.97 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 15.71% (41/261) 2.03 0.0 0.0
GO:0005515 protein binding 17.62% (46/261) 1.84 0.0 0.0
GO:0032555 purine ribonucleotide binding 15.71% (41/261) 1.95 0.0 0.0
GO:0005524 ATP binding 14.18% (37/261) 2.06 0.0 0.0
GO:0032553 ribonucleotide binding 15.71% (41/261) 1.93 0.0 0.0
GO:0097367 carbohydrate derivative binding 15.71% (41/261) 1.92 0.0 0.0
GO:0097159 organic cyclic compound binding 28.74% (75/261) 1.24 0.0 0.0
GO:1901363 heterocyclic compound binding 28.74% (75/261) 1.24 0.0 0.0
GO:0043167 ion binding 22.99% (60/261) 1.45 0.0 0.0
GO:0043168 anion binding 16.09% (42/261) 1.83 0.0 0.0
GO:0017076 purine nucleotide binding 15.71% (41/261) 1.86 0.0 0.0
GO:1901265 nucleoside phosphate binding 16.09% (42/261) 1.82 0.0 0.0
GO:0000166 nucleotide binding 16.09% (42/261) 1.82 0.0 0.0
GO:0036094 small molecule binding 16.48% (43/261) 1.8 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 14.18% (37/261) 1.97 0.0 0.0
GO:0030554 adenyl nucleotide binding 14.18% (37/261) 1.87 0.0 0.0
GO:0140097 catalytic activity, acting on DNA 4.6% (12/261) 3.91 0.0 0.0
GO:0032991 protein-containing complex 7.28% (19/261) 2.81 0.0 0.0
GO:0003676 nucleic acid binding 19.16% (50/261) 1.44 0.0 0.0
GO:0046483 heterocycle metabolic process 9.96% (26/261) 2.1 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 9.96% (26/261) 2.1 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 9.58% (25/261) 2.14 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 9.96% (26/261) 2.07 0.0 0.0
GO:0090304 nucleic acid metabolic process 8.81% (23/261) 2.2 0.0 0.0
GO:0140657 ATP-dependent activity 6.13% (16/261) 2.73 0.0 0.0
GO:0005643 nuclear pore 1.92% (5/261) 5.58 0.0 1e-06
GO:0140513 nuclear protein-containing complex 3.07% (8/261) 3.83 0.0 1e-06
GO:0017056 structural constituent of nuclear pore 1.53% (4/261) 6.25 0.0 2e-06
GO:0034641 cellular nitrogen compound metabolic process 9.96% (26/261) 1.69 0.0 3e-06
GO:0005634 nucleus 3.83% (10/261) 3.17 0.0 3e-06
GO:0006281 DNA repair 3.07% (8/261) 3.65 0.0 3e-06
GO:0006974 DNA damage response 3.07% (8/261) 3.57 0.0 5e-06
GO:0033554 cellular response to stress 3.07% (8/261) 3.57 0.0 5e-06
GO:0051716 cellular response to stimulus 3.07% (8/261) 3.57 0.0 5e-06
GO:0005575 cellular_component 13.79% (36/261) 1.31 0.0 6e-06
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.6% (12/261) 2.65 1e-06 7e-06
GO:0016817 hydrolase activity, acting on acid anhydrides 4.6% (12/261) 2.64 1e-06 7e-06
GO:0043231 intracellular membrane-bounded organelle 3.83% (10/261) 2.93 1e-06 1e-05
GO:0043227 membrane-bounded organelle 3.83% (10/261) 2.93 1e-06 1e-05
GO:0004386 helicase activity 2.68% (7/261) 3.72 1e-06 1.1e-05
GO:0006259 DNA metabolic process 4.98% (13/261) 2.43 1e-06 1.1e-05
GO:0008094 ATP-dependent activity, acting on DNA 2.68% (7/261) 3.6 2e-06 1.9e-05
GO:0003723 RNA binding 5.36% (14/261) 2.15 4e-06 4.1e-05
GO:0003677 DNA binding 7.28% (19/261) 1.7 8e-06 7.8e-05
GO:0140640 catalytic activity, acting on a nucleic acid 9.2% (24/261) 1.44 1e-05 9.8e-05
GO:0000148 1,3-beta-D-glucan synthase complex 1.15% (3/261) 5.65 2.3e-05 0.000196
GO:0003843 1,3-beta-D-glucan synthase activity 1.15% (3/261) 5.65 2.3e-05 0.000196
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.15% (3/261) 5.65 2.3e-05 0.000196
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.15% (3/261) 5.65 2.3e-05 0.000196
GO:0009987 cellular process 18.01% (47/261) 0.89 2.5e-05 0.000217
GO:0006260 DNA replication 1.53% (4/261) 4.42 3.4e-05 0.000286
GO:0018024 obsolete histone lysine N-methyltransferase activity 1.15% (3/261) 5.33 4.8e-05 0.000391
GO:0003824 catalytic activity 24.9% (65/261) 0.68 5.7e-05 0.000439
GO:0004055 argininosuccinate synthase activity 0.77% (2/261) 7.06 5.6e-05 0.00044
GO:0000178 exosome (RNase complex) 0.77% (2/261) 7.06 5.6e-05 0.00044
GO:0030983 mismatched DNA binding 1.15% (3/261) 5.19 6.5e-05 0.000498
GO:0043170 macromolecule metabolic process 13.79% (36/261) 0.99 6.9e-05 0.000515
GO:0044237 cellular metabolic process 13.03% (34/261) 1.02 7e-05 0.000519
GO:0006807 nitrogen compound metabolic process 14.56% (38/261) 0.95 7.2e-05 0.000521
GO:0098797 plasma membrane protein complex 1.15% (3/261) 5.06 8.7e-05 0.000608
GO:0006298 mismatch repair 1.15% (3/261) 5.06 8.7e-05 0.000608
GO:0016462 pyrophosphatase activity 3.45% (9/261) 2.27 0.000118 0.000817
GO:0016779 nucleotidyltransferase activity 2.3% (6/261) 2.97 0.000123 0.000833
GO:0016874 ligase activity 2.3% (6/261) 2.95 0.000136 0.000913
GO:1905354 exoribonuclease complex 0.77% (2/261) 6.48 0.000167 0.001022
GO:0003910 DNA ligase (ATP) activity 0.77% (2/261) 6.48 0.000167 0.001022
GO:0006525 arginine metabolic process 0.77% (2/261) 6.48 0.000167 0.001022
GO:0003909 DNA ligase activity 0.77% (2/261) 6.48 0.000167 0.001022
GO:0006526 arginine biosynthetic process 0.77% (2/261) 6.48 0.000167 0.001022
GO:0015631 tubulin binding 1.92% (5/261) 3.3 0.00016 0.001058
GO:0005085 guanyl-nucleotide exchange factor activity 1.15% (3/261) 4.74 0.000176 0.001068
GO:1990234 transferase complex 1.53% (4/261) 3.7 0.00025 0.001491
GO:0099023 vesicle tethering complex 1.15% (3/261) 4.56 0.000261 0.001536
GO:1902494 catalytic complex 2.3% (6/261) 2.76 0.000271 0.001579
GO:0008150 biological_process 23.75% (62/261) 0.62 0.000299 0.001673
GO:0071704 organic substance metabolic process 16.09% (42/261) 0.8 0.000297 0.001685
GO:0044238 primary metabolic process 15.71% (41/261) 0.81 0.000295 0.001691
GO:0016887 ATP hydrolysis activity 2.3% (6/261) 2.73 0.000311 0.001717
GO:0016886 ligase activity, forming phosphoric ester bonds 0.77% (2/261) 6.06 0.000331 0.001787
GO:0016070 RNA metabolic process 3.83% (10/261) 1.94 0.000329 0.001795
GO:0017111 ribonucleoside triphosphate phosphatase activity 3.07% (8/261) 2.19 0.00042 0.002239
GO:0043015 gamma-tubulin binding 0.77% (2/261) 5.74 0.00055 0.002893
GO:0044042 glucan metabolic process 1.15% (3/261) 4.12 0.000657 0.003262
GO:0051274 beta-glucan biosynthetic process 1.15% (3/261) 4.12 0.000657 0.003262
GO:0000271 polysaccharide biosynthetic process 1.15% (3/261) 4.12 0.000657 0.003262
GO:0051273 beta-glucan metabolic process 1.15% (3/261) 4.12 0.000657 0.003262
GO:0009250 glucan biosynthetic process 1.15% (3/261) 4.12 0.000657 0.003262
GO:0008092 cytoskeletal protein binding 1.92% (5/261) 2.84 0.000687 0.003373
GO:0008152 metabolic process 16.48% (43/261) 0.73 0.00071 0.003449
GO:0051641 cellular localization 2.3% (6/261) 2.5 0.000726 0.00349
GO:0003774 cytoskeletal motor activity 1.53% (4/261) 3.23 0.000887 0.004215
GO:0034968 histone lysine methylation 0.77% (2/261) 5.25 0.001143 0.005103
GO:0046578 regulation of Ras protein signal transduction 0.77% (2/261) 5.25 0.001143 0.005103
GO:0051056 regulation of small GTPase mediated signal transduction 0.77% (2/261) 5.25 0.001143 0.005103
GO:0016571 histone methylation 0.77% (2/261) 5.25 0.001143 0.005103
GO:0032012 regulation of ARF protein signal transduction 0.77% (2/261) 5.25 0.001143 0.005103
GO:0018022 peptidyl-lysine methylation 0.77% (2/261) 5.25 0.001143 0.005103
GO:0006950 response to stress 3.07% (8/261) 1.96 0.001167 0.005157
GO:0051649 establishment of localization in cell 1.92% (5/261) 2.62 0.001402 0.006074
GO:0046907 intracellular transport 1.92% (5/261) 2.62 0.001402 0.006074
GO:0035251 UDP-glucosyltransferase activity 1.15% (3/261) 3.74 0.001449 0.006217
GO:0006310 DNA recombination 0.77% (2/261) 5.06 0.001517 0.006384
GO:1902531 regulation of intracellular signal transduction 0.77% (2/261) 5.06 0.001517 0.006384
GO:0140658 ATP-dependent chromatin remodeler activity 1.15% (3/261) 3.6 0.001915 0.007985
GO:0005976 polysaccharide metabolic process 1.15% (3/261) 3.56 0.002089 0.008628
GO:0003690 double-stranded DNA binding 1.15% (3/261) 3.52 0.002272 0.009298
GO:0006479 protein methylation 0.77% (2/261) 4.74 0.002413 0.009524
GO:0008213 protein alkylation 0.77% (2/261) 4.74 0.002413 0.009524
GO:0003887 DNA-directed DNA polymerase activity 0.77% (2/261) 4.74 0.002413 0.009524
GO:0000145 exocyst 0.77% (2/261) 4.74 0.002413 0.009524
GO:0030695 GTPase regulator activity 1.15% (3/261) 3.48 0.002465 0.009557
GO:0060589 nucleoside-triphosphatase regulator activity 1.15% (3/261) 3.48 0.002465 0.009557
GO:0016570 histone modification 0.77% (2/261) 4.6 0.002935 0.010811
GO:0016459 myosin complex 0.77% (2/261) 4.6 0.002935 0.010811
GO:0009966 regulation of signal transduction 0.77% (2/261) 4.6 0.002935 0.010811
GO:0010646 regulation of cell communication 0.77% (2/261) 4.6 0.002935 0.010811
GO:0023051 regulation of signaling 0.77% (2/261) 4.6 0.002935 0.010811
GO:0016192 vesicle-mediated transport 1.53% (4/261) 2.78 0.002834 0.010892
GO:0050896 response to stimulus 3.07% (8/261) 1.74 0.003049 0.011137
GO:0043229 intracellular organelle 3.83% (10/261) 1.5 0.003103 0.011151
GO:0043226 organelle 3.83% (10/261) 1.5 0.003103 0.011151
GO:0009064 glutamine family amino acid metabolic process 0.77% (2/261) 4.48 0.003505 0.012008
GO:0004527 exonuclease activity 0.77% (2/261) 4.48 0.003505 0.012008
GO:0018205 peptidyl-lysine modification 0.77% (2/261) 4.48 0.003505 0.012008
GO:0009084 glutamine family amino acid biosynthetic process 0.77% (2/261) 4.48 0.003505 0.012008
GO:0034061 DNA polymerase activity 0.77% (2/261) 4.48 0.003505 0.012008
GO:0043687 post-translational protein modification 1.53% (4/261) 2.7 0.003395 0.012101
GO:0008270 zinc ion binding 5.36% (14/261) 1.19 0.003739 0.012712
GO:0018193 peptidyl-amino acid modification 1.15% (3/261) 3.25 0.003835 0.012939
GO:0140299 small molecule sensor activity 0.77% (2/261) 4.36 0.004121 0.013801
GO:0045184 establishment of protein localization 1.53% (4/261) 2.38 0.007599 0.021811
GO:0033036 macromolecule localization 1.53% (4/261) 2.38 0.007599 0.021811
GO:0008104 protein localization 1.53% (4/261) 2.38 0.007599 0.021811
GO:0070727 cellular macromolecule localization 1.53% (4/261) 2.38 0.007599 0.021811
GO:0003689 DNA clamp loader activity 0.38% (1/261) 7.06 0.007484 0.022052
GO:0006904 vesicle docking involved in exocytosis 0.38% (1/261) 7.06 0.007484 0.022052
GO:0048278 vesicle docking 0.38% (1/261) 7.06 0.007484 0.022052
GO:0051640 organelle localization 0.38% (1/261) 7.06 0.007484 0.022052
GO:0140029 exocytic process 0.38% (1/261) 7.06 0.007484 0.022052
GO:0006784 heme A biosynthetic process 0.38% (1/261) 7.06 0.007484 0.022052
GO:0140056 organelle localization by membrane tethering 0.38% (1/261) 7.06 0.007484 0.022052
GO:0005663 DNA replication factor C complex 0.38% (1/261) 7.06 0.007484 0.022052
GO:0043047 single-stranded telomeric DNA binding 0.38% (1/261) 7.06 0.007484 0.022052
GO:0022406 membrane docking 0.38% (1/261) 7.06 0.007484 0.022052
GO:0042162 telomeric DNA binding 0.38% (1/261) 7.06 0.007484 0.022052
GO:0000176 nuclear exosome (RNase complex) 0.38% (1/261) 7.06 0.007484 0.022052
GO:0046160 heme a metabolic process 0.38% (1/261) 7.06 0.007484 0.022052
GO:0000781 chromosome, telomeric region 0.38% (1/261) 7.06 0.007484 0.022052
GO:0098847 sequence-specific single stranded DNA binding 0.38% (1/261) 7.06 0.007484 0.022052
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor 0.38% (1/261) 7.06 0.007484 0.022052
GO:0048583 regulation of response to stimulus 0.77% (2/261) 3.89 0.007888 0.022493
GO:0015031 protein transport 1.53% (4/261) 2.42 0.006858 0.02279
GO:0016051 carbohydrate biosynthetic process 1.15% (3/261) 2.95 0.006989 0.023053
GO:0046527 glucosyltransferase activity 1.15% (3/261) 2.79 0.009443 0.026756
GO:0046872 metal ion binding 7.28% (19/261) 0.86 0.009652 0.027173
GO:0043169 cation binding 7.28% (19/261) 0.85 0.009996 0.027964
GO:0008017 microtubule binding 1.15% (3/261) 2.72 0.010836 0.030122
GO:0006520 amino acid metabolic process 1.53% (4/261) 2.13 0.013532 0.037384
GO:0006886 intracellular protein transport 1.15% (3/261) 2.58 0.01396 0.038325
GO:0017070 U6 snRNA binding 0.38% (1/261) 6.06 0.014912 0.039468
GO:0017069 snRNA binding 0.38% (1/261) 6.06 0.014912 0.039468
GO:0043138 3'-5' DNA helicase activity 0.38% (1/261) 6.06 0.014912 0.039468
GO:0030623 U5 snRNA binding 0.38% (1/261) 6.06 0.014912 0.039468
GO:0140664 ATP-dependent DNA damage sensor activity 0.38% (1/261) 6.06 0.014912 0.039468
GO:0140612 DNA damage sensor activity 0.38% (1/261) 6.06 0.014912 0.039468
GO:0071705 nitrogen compound transport 1.53% (4/261) 2.06 0.01588 0.041532
GO:0046914 transition metal ion binding 5.75% (15/261) 0.9 0.015835 0.04166
GO:0043414 macromolecule methylation 0.77% (2/261) 3.36 0.01611 0.041887
GO:0098796 membrane protein complex 1.53% (4/261) 2.05 0.016294 0.042117
GO:1901607 alpha-amino acid biosynthetic process 0.77% (2/261) 3.25 0.018555 0.047683
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_29 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_257 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_132 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_8 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_29 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_31 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_74 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_100 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_110 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_160 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (261) (download table)

InterPro Domains

GO Terms

Family Terms