Coexpression cluster: Cluster_137 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032469 endoplasmic reticulum calcium ion homeostasis 1.18% (2/170) 7.33 5.1e-05 0.006439
GO:0055074 calcium ion homeostasis 1.18% (2/170) 7.33 5.1e-05 0.006439
GO:0006874 intracellular calcium ion homeostasis 1.18% (2/170) 7.33 5.1e-05 0.006439
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.71% (8/170) 1.97 0.001111 0.015478
GO:0016817 hydrolase activity, acting on acid anhydrides 4.71% (8/170) 1.96 0.001155 0.015512
GO:0018393 internal peptidyl-lysine acetylation 1.18% (2/170) 5.33 0.001103 0.015946
GO:0018394 peptidyl-lysine acetylation 1.18% (2/170) 5.33 0.001103 0.015946
GO:0034212 peptide N-acetyltransferase activity 1.18% (2/170) 5.33 0.001103 0.015946
GO:0061733 peptide-lysine-N-acetyltransferase activity 1.18% (2/170) 5.33 0.001103 0.015946
GO:0140993 histone modifying activity 1.18% (2/170) 5.33 0.001103 0.015946
GO:0004402 histone acetyltransferase activity 1.18% (2/170) 5.33 0.001103 0.015946
GO:0006475 internal protein amino acid acetylation 1.18% (2/170) 5.33 0.001103 0.015946
GO:0016573 histone acetylation 1.18% (2/170) 5.33 0.001103 0.015946
GO:0016887 ATP hydrolysis activity 2.94% (5/170) 2.64 0.00132 0.016016
GO:0006473 protein acetylation 1.18% (2/170) 5.21 0.0013 0.016288
GO:0043543 protein acylation 1.18% (2/170) 5.21 0.0013 0.016288
GO:0043170 macromolecule metabolic process 16.47% (28/170) 0.86 0.001404 0.016495
GO:0098796 membrane protein complex 4.12% (7/170) 2.59 0.000178 0.016711
GO:0008152 metabolic process 22.35% (38/170) 0.7 0.001523 0.016847
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.18% (2/170) 5.0 0.00174 0.017216
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.18% (2/170) 5.0 0.00174 0.017216
GO:0000148 1,3-beta-D-glucan synthase complex 1.18% (2/170) 5.0 0.00174 0.017216
GO:0003843 1,3-beta-D-glucan synthase activity 1.18% (2/170) 5.0 0.00174 0.017216
GO:0008080 N-acetyltransferase activity 1.18% (2/170) 5.1 0.001512 0.017228
GO:0051603 proteolysis involved in protein catabolic process 2.35% (4/170) 2.92 0.002001 0.018806
GO:0016787 hydrolase activity 11.76% (20/170) 1.03 0.001995 0.01923
GO:0035251 UDP-glucosyltransferase activity 1.76% (3/170) 3.54 0.002228 0.020432
GO:0005524 ATP binding 10.59% (18/170) 1.08 0.002326 0.020823
GO:0019538 protein metabolic process 13.53% (23/170) 0.91 0.00252 0.021052
GO:0044238 primary metabolic process 20.0% (34/170) 0.71 0.002428 0.021229
GO:0016462 pyrophosphatase activity 4.71% (8/170) 2.0 0.000962 0.021287
GO:0016410 N-acyltransferase activity 1.18% (2/170) 4.74 0.002515 0.021489
GO:0098771 inorganic ion homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0055082 intracellular chemical homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0055080 monoatomic cation homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0050801 monoatomic ion homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0048878 chemical homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0019725 cellular homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0030003 intracellular monoatomic cation homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0042592 homeostatic process 1.18% (2/170) 5.45 0.000921 0.021653
GO:0006873 intracellular monoatomic ion homeostasis 1.18% (2/170) 5.45 0.000921 0.021653
GO:0035639 purine ribonucleoside triphosphate binding 12.35% (21/170) 1.07 0.001063 0.022209
GO:0032991 protein-containing complex 6.47% (11/170) 1.83 0.000314 0.023623
GO:0032555 purine ribonucleotide binding 12.35% (21/170) 0.95 0.002909 0.02378
GO:0032553 ribonucleotide binding 12.35% (21/170) 0.94 0.00311 0.02488
GO:0016407 acetyltransferase activity 1.18% (2/170) 4.52 0.003423 0.025744
GO:0005783 endoplasmic reticulum 1.18% (2/170) 4.52 0.003423 0.025744
GO:0097367 carbohydrate derivative binding 12.35% (21/170) 0.93 0.003352 0.026254
GO:0043167 ion binding 18.24% (31/170) 0.72 0.003588 0.026452
GO:1902494 catalytic complex 2.94% (5/170) 2.3 0.003706 0.026799
GO:0000814 ESCRT II complex 0.59% (1/170) 7.91 0.004156 0.028938
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity 0.59% (1/170) 7.91 0.004156 0.028938
GO:0018193 peptidyl-amino acid modification 1.76% (3/170) 3.21 0.00427 0.029189
GO:0071704 organic substance metabolic process 20.0% (34/170) 0.65 0.00476 0.031959
GO:0008150 biological_process 32.94% (56/170) 0.46 0.005229 0.034492
GO:0017076 purine nucleotide binding 12.35% (21/170) 0.87 0.005392 0.034958
GO:0043168 anion binding 12.94% (22/170) 0.84 0.005628 0.035864
GO:0098797 plasma membrane protein complex 1.18% (2/170) 4.1 0.006046 0.037887
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.71% (8/170) 2.07 0.000712 0.038267
GO:0006508 proteolysis 5.29% (9/170) 1.94 0.00062 0.038829
GO:0032559 adenyl ribonucleotide binding 10.59% (18/170) 0.94 0.006341 0.039086
GO:0008234 cysteine-type peptidase activity 2.35% (4/170) 2.44 0.006522 0.039554
GO:0003824 catalytic activity 27.65% (47/170) 0.5 0.006766 0.040379
GO:0003674 molecular_function 50.59% (86/170) 0.3 0.007094 0.041036
GO:0016192 vesicle-mediated transport 2.35% (4/170) 2.41 0.007047 0.041403
GO:0005575 cellular_component 15.29% (26/170) 0.72 0.007587 0.042578
GO:0036094 small molecule binding 12.94% (22/170) 0.8 0.007562 0.043082
GO:0018205 peptidyl-lysine modification 1.18% (2/170) 3.91 0.007847 0.043391
GO:0006807 nitrogen compound metabolic process 15.88% (27/170) 0.69 0.008571 0.043548
GO:0006511 ubiquitin-dependent protein catabolic process 1.76% (3/170) 2.85 0.008493 0.043743
GO:0043632 modification-dependent macromolecule catabolic process 1.76% (3/170) 2.85 0.008493 0.043743
GO:0019941 modification-dependent protein catabolic process 1.76% (3/170) 2.85 0.008493 0.043743
GO:0016570 histone modification 1.18% (2/170) 3.87 0.008331 0.044749
GO:0000166 nucleotide binding 12.35% (21/170) 0.8 0.009086 0.044953
GO:1901265 nucleoside phosphate binding 12.35% (21/170) 0.8 0.009086 0.044953
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity 0.59% (1/170) 6.91 0.008295 0.0452
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_17 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_29 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_51 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_69 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_70 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_82 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_91 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_156 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_164 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_211 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_232 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_233 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_251 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_268 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_44 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (170) (download table)

InterPro Domains

GO Terms

Family Terms