Coexpression cluster: Cluster_110 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140658 ATP-dependent chromatin remodeler activity 7.55% (4/53) 6.32 0.0 4e-05
GO:0005515 protein binding 22.64% (12/53) 2.2 8e-06 0.000557
GO:0008094 ATP-dependent activity, acting on DNA 7.55% (4/53) 5.1 6e-06 0.000628
GO:0140097 catalytic activity, acting on DNA 7.55% (4/53) 4.62 2.2e-05 0.001158
GO:0046578 regulation of Ras protein signal transduction 3.77% (2/53) 7.55 4.7e-05 0.001255
GO:0032012 regulation of ARF protein signal transduction 3.77% (2/53) 7.55 4.7e-05 0.001255
GO:0051056 regulation of small GTPase mediated signal transduction 3.77% (2/53) 7.55 4.7e-05 0.001255
GO:1902531 regulation of intracellular signal transduction 3.77% (2/53) 7.36 6.3e-05 0.001486
GO:0003674 molecular_function 56.6% (30/53) 0.94 3.7e-05 0.001564
GO:0010646 regulation of cell communication 3.77% (2/53) 6.9 0.000124 0.002183
GO:0009966 regulation of signal transduction 3.77% (2/53) 6.9 0.000124 0.002183
GO:0023051 regulation of signaling 3.77% (2/53) 6.9 0.000124 0.002183
GO:0005085 guanyl-nucleotide exchange factor activity 3.77% (2/53) 6.46 0.000235 0.003831
GO:0048583 regulation of response to stimulus 3.77% (2/53) 6.19 0.000341 0.005169
GO:0006338 chromatin remodeling 3.77% (2/53) 6.11 0.000381 0.005387
GO:0005488 binding 39.62% (21/53) 1.06 0.000415 0.005496
GO:0016043 cellular component organization 7.55% (4/53) 3.47 0.000476 0.005611
GO:0071824 protein-DNA complex organization 3.77% (2/53) 5.9 0.000513 0.005728
GO:0006325 chromatin organization 3.77% (2/53) 5.97 0.000467 0.005825
GO:0071840 cellular component organization or biogenesis 7.55% (4/53) 3.33 0.000673 0.007134
GO:0070646 protein modification by small protein removal 3.77% (2/53) 5.46 0.000959 0.009243
GO:0016579 protein deubiquitination 3.77% (2/53) 5.46 0.000959 0.009243
GO:0004843 cysteine-type deubiquitinase activity 3.77% (2/53) 5.32 0.001161 0.009844
GO:0101005 deubiquitinase activity 3.77% (2/53) 5.32 0.001161 0.009844
GO:0019783 ubiquitin-like protein peptidase activity 3.77% (2/53) 5.32 0.001161 0.009844
GO:0060589 nucleoside-triphosphatase regulator activity 3.77% (2/53) 5.19 0.001381 0.010844
GO:0030695 GTPase regulator activity 3.77% (2/53) 5.19 0.001381 0.010844
GO:0140657 ATP-dependent activity 7.55% (4/53) 3.03 0.001463 0.011076
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.77% (2/53) 4.81 0.002345 0.01714
GO:0034062 5'-3' RNA polymerase activity 3.77% (2/53) 4.63 0.002971 0.020321
GO:0097747 RNA polymerase activity 3.77% (2/53) 4.63 0.002971 0.020321
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.89% (1/53) 7.78 0.004552 0.021447
GO:0008064 regulation of actin polymerization or depolymerization 1.89% (1/53) 7.78 0.004552 0.021447
GO:1902903 regulation of supramolecular fiber organization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0030832 regulation of actin filament length 1.89% (1/53) 7.78 0.004552 0.021447
GO:0030833 regulation of actin filament polymerization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0032271 regulation of protein polymerization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0032535 regulation of cellular component size 1.89% (1/53) 7.78 0.004552 0.021447
GO:0032956 regulation of actin cytoskeleton organization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0032970 regulation of actin filament-based process 1.89% (1/53) 7.78 0.004552 0.021447
GO:0043254 regulation of protein-containing complex assembly 1.89% (1/53) 7.78 0.004552 0.021447
GO:0110053 regulation of actin filament organization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0051493 regulation of cytoskeleton organization 1.89% (1/53) 7.78 0.004552 0.021447
GO:0090066 regulation of anatomical structure size 1.89% (1/53) 7.78 0.004552 0.021447
GO:0070647 protein modification by small protein conjugation or removal 3.77% (2/53) 4.25 0.004981 0.022955
GO:1901362 organic cyclic compound biosynthetic process 5.66% (3/53) 3.07 0.005522 0.024906
GO:0044087 regulation of cellular component biogenesis 1.89% (1/53) 7.36 0.006065 0.026788
GO:0043933 protein-containing complex organization 3.77% (2/53) 4.36 0.004301 0.028494
GO:0003677 DNA binding 9.43% (5/53) 2.07 0.00661 0.028599
GO:0043687 post-translational protein modification 3.77% (2/53) 4.0 0.006963 0.029522
GO:0006402 mRNA catabolic process 1.89% (1/53) 7.04 0.007576 0.030887
GO:0000956 nuclear-transcribed mRNA catabolic process 1.89% (1/53) 7.04 0.007576 0.030887
GO:0006351 DNA-templated transcription 3.77% (2/53) 3.9 0.007979 0.031917
GO:0006401 RNA catabolic process 1.89% (1/53) 6.78 0.009084 0.033787
GO:0033043 regulation of organelle organization 1.89% (1/53) 6.78 0.009084 0.033787
GO:0140640 catalytic activity, acting on a nucleic acid 11.32% (6/53) 1.74 0.008738 0.034304
GO:0005524 ATP binding 11.32% (6/53) 1.74 0.008946 0.034485
GO:0016779 nucleotidyltransferase activity 3.77% (2/53) 3.69 0.010593 0.038718
GO:0000148 1,3-beta-D-glucan synthase complex 1.89% (1/53) 6.36 0.012094 0.038849
GO:0016229 steroid dehydrogenase activity 1.89% (1/53) 6.36 0.012094 0.038849
GO:0003843 1,3-beta-D-glucan synthase activity 1.89% (1/53) 6.36 0.012094 0.038849
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.89% (1/53) 6.36 0.012094 0.038849
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 1.89% (1/53) 6.36 0.012094 0.038849
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.89% (1/53) 6.36 0.012094 0.038849
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.89% (1/53) 6.36 0.012094 0.038849
GO:0003824 catalytic activity 28.3% (15/53) 0.86 0.012934 0.040926
GO:0016740 transferase activity 13.21% (7/53) 1.44 0.013758 0.042271
GO:0005694 chromosome 1.89% (1/53) 6.19 0.013596 0.042388
GO:0032559 adenyl ribonucleotide binding 11.32% (6/53) 1.65 0.011912 0.042804
GO:0051020 GTPase binding 1.89% (1/53) 6.04 0.015096 0.043247
GO:0031267 small GTPase binding 1.89% (1/53) 6.04 0.015096 0.043247
GO:0051128 regulation of cellular component organization 1.89% (1/53) 6.04 0.015096 0.043247
GO:0032774 RNA biosynthetic process 3.77% (2/53) 3.41 0.015353 0.043398
GO:0050794 regulation of cellular process 7.55% (4/53) 2.04 0.016272 0.043667
GO:0008194 UDP-glycosyltransferase activity 3.77% (2/53) 3.46 0.01443 0.043703
GO:0030554 adenyl nucleotide binding 11.32% (6/53) 1.55 0.016097 0.043752
GO:0016070 RNA metabolic process 5.66% (3/53) 2.5 0.016095 0.044314
GO:0030234 enzyme regulator activity 3.77% (2/53) 3.43 0.014889 0.044456
GO:0035639 purine ribonucleoside triphosphate binding 11.32% (6/53) 1.55 0.015938 0.044458
GO:0050789 regulation of biological process 7.55% (4/53) 2.02 0.016866 0.044694
GO:0065008 regulation of biological quality 1.89% (1/53) 5.78 0.018088 0.045113
GO:0000786 nucleosome 1.89% (1/53) 5.78 0.018088 0.045113
GO:0098797 plasma membrane protein complex 1.89% (1/53) 5.78 0.018088 0.045113
GO:0098772 molecular function regulator activity 3.77% (2/53) 3.32 0.017273 0.045208
GO:0065007 biological regulation 7.55% (4/53) 2.0 0.017825 0.046085
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.89% (1/53) 5.66 0.019581 0.046641
GO:0032993 protein-DNA complex 1.89% (1/53) 5.66 0.019581 0.046641
GO:0006694 steroid biosynthetic process 1.89% (1/53) 5.66 0.019581 0.046641
GO:0008202 steroid metabolic process 1.89% (1/53) 5.66 0.019581 0.046641
GO:0032555 purine ribonucleotide binding 11.32% (6/53) 1.47 0.020324 0.047876
GO:0032553 ribonucleotide binding 11.32% (6/53) 1.46 0.021215 0.04836
GO:0016311 dephosphorylation 1.89% (1/53) 5.55 0.021071 0.048555
GO:0004721 phosphoprotein phosphatase activity 1.89% (1/53) 5.55 0.021071 0.048555
GO:0097367 carbohydrate derivative binding 11.32% (6/53) 1.45 0.021801 0.049167
GO:0034728 nucleosome organization 1.89% (1/53) 5.46 0.022559 0.049305
GO:0006334 nucleosome assembly 1.89% (1/53) 5.46 0.022559 0.049305
GO:1901576 organic substance biosynthetic process 7.55% (4/53) 1.9 0.022206 0.049555
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_33 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_172 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_198 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_242 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_245 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_260 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_22 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_112 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_240 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_5 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_60 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_74 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_78 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_85 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_88 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_92 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_96 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_97 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_112 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_164 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_240 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_275 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_382 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_436 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_159 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (53) (download table)

InterPro Domains

GO Terms

Family Terms