Coexpression cluster: Cluster_113 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 20.83% (10/48) 5.69 0.0 0.0
GO:0016070 RNA metabolic process 22.92% (11/48) 4.52 0.0 0.0
GO:0006364 rRNA processing 12.5% (6/48) 6.88 0.0 0.0
GO:0016072 rRNA metabolic process 12.5% (6/48) 6.88 0.0 0.0
GO:0003723 RNA binding 20.83% (10/48) 4.11 0.0 0.0
GO:0034470 ncRNA processing 12.5% (6/48) 6.09 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 27.08% (13/48) 3.13 0.0 0.0
GO:0090304 nucleic acid metabolic process 22.92% (11/48) 3.57 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 22.92% (11/48) 3.39 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 22.92% (11/48) 3.3 0.0 0.0
GO:0046483 heterocycle metabolic process 22.92% (11/48) 3.3 0.0 0.0
GO:0005488 binding 56.25% (27/48) 1.56 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 22.92% (11/48) 3.27 0.0 0.0
GO:0034660 ncRNA metabolic process 12.5% (6/48) 5.18 0.0 0.0
GO:0019843 rRNA binding 8.33% (4/48) 7.05 0.0 0.0
GO:1901363 heterocyclic compound binding 39.58% (19/48) 1.71 1e-06 8e-06
GO:0097159 organic cyclic compound binding 39.58% (19/48) 1.71 1e-06 8e-06
GO:0042254 ribosome biogenesis 6.25% (3/48) 6.84 2e-06 1.3e-05
GO:0003674 molecular_function 62.5% (30/48) 1.08 2e-06 1.4e-05
GO:0043170 macromolecule metabolic process 29.17% (14/48) 2.07 3e-06 1.6e-05
GO:0022613 ribonucleoprotein complex biogenesis 6.25% (3/48) 6.7 3e-06 1.6e-05
GO:0003676 nucleic acid binding 29.17% (14/48) 2.05 4e-06 1.7e-05
GO:0044085 cellular component biogenesis 6.25% (3/48) 6.57 4e-06 2e-05
GO:0044237 cellular metabolic process 27.08% (13/48) 2.08 7e-06 3.1e-05
GO:0006807 nitrogen compound metabolic process 29.17% (14/48) 1.95 8e-06 3.3e-05
GO:0009987 cellular process 31.25% (15/48) 1.69 3.1e-05 0.000127
GO:0044238 primary metabolic process 29.17% (14/48) 1.7 5.3e-05 0.000206
GO:0032040 small-subunit processome 4.17% (2/48) 7.5 5.2e-05 0.000207
GO:0030684 preribosome 4.17% (2/48) 7.34 6.6e-05 0.000247
GO:0071704 organic substance metabolic process 29.17% (14/48) 1.66 7.7e-05 0.000276
GO:0008152 metabolic process 29.17% (14/48) 1.55 0.000169 0.00059
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.33% (4/48) 3.63 0.00031 0.001046
GO:0016462 pyrophosphatase activity 8.33% (4/48) 3.54 0.000386 0.001262
GO:0016817 hydrolase activity, acting on acid anhydrides 8.33% (4/48) 3.5 0.000434 0.001341
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.33% (4/48) 3.5 0.000428 0.00136
GO:0043226 organelle 10.42% (5/48) 2.95 0.000467 0.001363
GO:0043229 intracellular organelle 10.42% (5/48) 2.95 0.000467 0.001363
GO:0005634 nucleus 6.25% (3/48) 3.88 0.001126 0.003201
GO:1990904 ribonucleoprotein complex 4.17% (2/48) 5.26 0.001263 0.003499
GO:0032561 guanyl ribonucleotide binding 6.25% (3/48) 3.77 0.001409 0.003711
GO:0005525 GTP binding 6.25% (3/48) 3.77 0.001409 0.003711
GO:0019001 guanyl nucleotide binding 6.25% (3/48) 3.73 0.001512 0.003888
GO:0008150 biological_process 33.33% (16/48) 1.11 0.001675 0.004207
GO:0043227 membrane-bounded organelle 6.25% (3/48) 3.64 0.00182 0.004367
GO:0043231 intracellular membrane-bounded organelle 6.25% (3/48) 3.64 0.00182 0.004367
GO:0005515 protein binding 16.67% (8/48) 1.76 0.002197 0.005159
GO:0035639 purine ribonucleoside triphosphate binding 14.58% (7/48) 1.92 0.002306 0.0053
GO:0032555 purine ribonucleotide binding 14.58% (7/48) 1.84 0.003134 0.007052
GO:0032553 ribonucleotide binding 14.58% (7/48) 1.83 0.003309 0.007293
GO:0097367 carbohydrate derivative binding 14.58% (7/48) 1.82 0.003425 0.007398
GO:0017076 purine nucleotide binding 14.58% (7/48) 1.75 0.004407 0.009334
GO:0005575 cellular_component 16.67% (8/48) 1.59 0.004569 0.00949
GO:1901265 nucleoside phosphate binding 14.58% (7/48) 1.68 0.005745 0.010886
GO:0000166 nucleotide binding 14.58% (7/48) 1.68 0.005745 0.010886
GO:0071840 cellular component organization or biogenesis 6.25% (3/48) 3.06 0.005591 0.010978
GO:0043168 anion binding 14.58% (7/48) 1.69 0.005535 0.011069
GO:0008097 5S rRNA binding 2.08% (1/48) 7.5 0.005494 0.011196
GO:0036094 small molecule binding 14.58% (7/48) 1.63 0.006979 0.012776
GO:0005759 mitochondrial matrix 2.08% (1/48) 7.18 0.006863 0.01278
GO:0070013 intracellular organelle lumen 2.08% (1/48) 6.92 0.00823 0.014337
GO:0031974 membrane-enclosed lumen 2.08% (1/48) 6.92 0.00823 0.014337
GO:0043233 organelle lumen 2.08% (1/48) 6.92 0.00823 0.014337
GO:0003924 GTPase activity 4.17% (2/48) 3.68 0.010651 0.018259
GO:0016887 ATP hydrolysis activity 4.17% (2/48) 3.59 0.012135 0.020477
GO:0004176 ATP-dependent peptidase activity 2.08% (1/48) 6.18 0.01368 0.02273
GO:0008168 methyltransferase activity 4.17% (2/48) 3.18 0.020553 0.033632
GO:0016741 transferase activity, transferring one-carbon groups 4.17% (2/48) 3.11 0.02251 0.036284
GO:0110165 cellular anatomical entity 12.5% (6/48) 1.41 0.024262 0.038534
GO:0001522 pseudouridine synthesis 2.08% (1/48) 5.18 0.027177 0.042538
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_235 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_327 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_99 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_324 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_16 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_98 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (48) (download table)

InterPro Domains

GO Terms

Family Terms