Coexpression cluster: Cluster_108 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 18.64% (11/59) 3.95 0.0 0.0
GO:0005488 binding 50.85% (30/59) 1.42 0.0 4e-06
GO:0003676 nucleic acid binding 30.51% (18/59) 2.11 0.0 5e-06
GO:0097159 organic cyclic compound binding 35.59% (21/59) 1.55 3e-06 0.000124
GO:1901363 heterocyclic compound binding 35.59% (21/59) 1.55 3e-06 0.000124
GO:0006396 RNA processing 8.47% (5/59) 4.39 4e-06 0.000156
GO:0003674 molecular_function 57.63% (34/59) 0.96 7e-06 0.00021
GO:0090304 nucleic acid metabolic process 13.56% (8/59) 2.82 1.7e-05 0.000465
GO:0016070 RNA metabolic process 10.17% (6/59) 3.35 2.8e-05 0.000681
GO:0006139 nucleobase-containing compound metabolic process 13.56% (8/59) 2.64 4.1e-05 0.000901
GO:0018193 peptidyl-amino acid modification 5.08% (3/59) 5.4 5e-05 0.001012
GO:0046483 heterocycle metabolic process 13.56% (8/59) 2.55 6.4e-05 0.001083
GO:0006725 cellular aromatic compound metabolic process 13.56% (8/59) 2.55 6.4e-05 0.001083
GO:1901360 organic cyclic compound metabolic process 13.56% (8/59) 2.52 7.3e-05 0.001153
GO:0006807 nitrogen compound metabolic process 22.03% (13/59) 1.55 0.00037 0.005445
GO:0034641 cellular nitrogen compound metabolic process 13.56% (8/59) 2.13 0.000448 0.006188
GO:0005515 protein binding 16.95% (10/59) 1.78 0.000561 0.007288
GO:0043170 macromolecule metabolic process 20.34% (12/59) 1.55 0.000652 0.007999
GO:0030117 membrane coat 3.39% (2/59) 5.68 0.000696 0.008093
GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity 1.69% (1/59) 9.21 0.001692 0.016994
GO:0017183 protein histidyl modification to diphthamide 1.69% (1/59) 9.21 0.001692 0.016994
GO:0018202 peptidyl-histidine modification 1.69% (1/59) 9.21 0.001692 0.016994
GO:0006397 mRNA processing 3.39% (2/59) 4.96 0.001902 0.017514
GO:0044238 primary metabolic process 22.03% (13/59) 1.3 0.001857 0.017847
GO:0016071 mRNA metabolic process 3.39% (2/59) 4.75 0.002543 0.021614
GO:0071704 organic substance metabolic process 22.03% (13/59) 1.25 0.002493 0.022034
GO:0042274 ribosomal small subunit biogenesis 1.69% (1/59) 8.21 0.003381 0.023348
GO:0000097 sulfur amino acid biosynthetic process 1.69% (1/59) 8.21 0.003381 0.023348
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 1.69% (1/59) 8.21 0.003381 0.023348
GO:0009086 methionine biosynthetic process 1.69% (1/59) 8.21 0.003381 0.023348
GO:0008172 S-methyltransferase activity 1.69% (1/59) 8.21 0.003381 0.023348
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 1.69% (1/59) 8.21 0.003381 0.023348
GO:0009987 cellular process 22.03% (13/59) 1.18 0.00379 0.025382
GO:0044237 cellular metabolic process 16.95% (10/59) 1.4 0.004052 0.026335
GO:0030131 clathrin adaptor complex 1.69% (1/59) 7.62 0.005067 0.029468
GO:0003909 DNA ligase activity 1.69% (1/59) 7.62 0.005067 0.029468
GO:0003910 DNA ligase (ATP) activity 1.69% (1/59) 7.62 0.005067 0.029468
GO:0008152 metabolic process 22.03% (13/59) 1.14 0.004719 0.029796
GO:0016886 ligase activity, forming phosphoric ester bonds 1.69% (1/59) 7.21 0.00675 0.03243
GO:0030118 clathrin coat 1.69% (1/59) 7.21 0.00675 0.03243
GO:0030125 clathrin vesicle coat 1.69% (1/59) 7.21 0.00675 0.03243
GO:0030130 clathrin coat of trans-Golgi network vesicle 1.69% (1/59) 7.21 0.00675 0.03243
GO:0030119 AP-type membrane coat adaptor complex 1.69% (1/59) 7.21 0.00675 0.03243
GO:0030132 clathrin coat of coated pit 1.69% (1/59) 7.21 0.00675 0.03243
GO:0006886 intracellular protein transport 3.39% (2/59) 4.14 0.005797 0.032849
GO:0035639 purine ribonucleoside triphosphate binding 11.86% (7/59) 1.62 0.007418 0.034882
GO:0016192 vesicle-mediated transport 3.39% (2/59) 3.92 0.00778 0.035821
GO:0008150 biological_process 28.81% (17/59) 0.9 0.006708 0.037064
GO:0006555 methionine metabolic process 1.69% (1/59) 6.89 0.008431 0.038024
GO:0006281 DNA repair 3.39% (2/59) 3.8 0.00918 0.040573
GO:0034968 histone lysine methylation 1.69% (1/59) 6.4 0.011783 0.040689
GO:0018022 peptidyl-lysine methylation 1.69% (1/59) 6.4 0.011783 0.040689
GO:0032012 regulation of ARF protein signal transduction 1.69% (1/59) 6.4 0.011783 0.040689
GO:0046578 regulation of Ras protein signal transduction 1.69% (1/59) 6.4 0.011783 0.040689
GO:0051056 regulation of small GTPase mediated signal transduction 1.69% (1/59) 6.4 0.011783 0.040689
GO:0016571 histone methylation 1.69% (1/59) 6.4 0.011783 0.040689
GO:0044272 sulfur compound biosynthetic process 1.69% (1/59) 6.4 0.011783 0.040689
GO:0032553 ribonucleotide binding 11.86% (7/59) 1.53 0.01039 0.041005
GO:0017076 purine nucleotide binding 11.86% (7/59) 1.45 0.013559 0.041049
GO:0051716 cellular response to stimulus 3.39% (2/59) 3.72 0.010243 0.041157
GO:0033554 cellular response to stress 3.39% (2/59) 3.72 0.010243 0.041157
GO:0006974 DNA damage response 3.39% (2/59) 3.72 0.010243 0.041157
GO:0000096 sulfur amino acid metabolic process 1.69% (1/59) 6.21 0.013456 0.041301
GO:1902531 regulation of intracellular signal transduction 1.69% (1/59) 6.21 0.013456 0.041301
GO:0006310 DNA recombination 1.69% (1/59) 6.21 0.013456 0.041301
GO:0097367 carbohydrate derivative binding 11.86% (7/59) 1.52 0.010729 0.0416
GO:0033036 macromolecule localization 3.39% (2/59) 3.52 0.013247 0.04243
GO:0045184 establishment of protein localization 3.39% (2/59) 3.52 0.013247 0.04243
GO:0008104 protein localization 3.39% (2/59) 3.52 0.013247 0.04243
GO:0070727 cellular macromolecule localization 3.39% (2/59) 3.52 0.013247 0.04243
GO:0015031 protein transport 3.39% (2/59) 3.56 0.012524 0.04258
GO:0032555 purine ribonucleotide binding 11.86% (7/59) 1.54 0.009879 0.042807
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 1.69% (1/59) 6.62 0.010108 0.042961
GO:0005524 ATP binding 10.17% (6/59) 1.58 0.014809 0.043062
GO:0003684 damaged DNA binding 1.69% (1/59) 6.04 0.015125 0.04341
GO:0051649 establishment of localization in cell 3.39% (2/59) 3.44 0.014748 0.043457
GO:0046907 intracellular transport 3.39% (2/59) 3.44 0.014748 0.043457
GO:0008213 protein alkylation 1.69% (1/59) 5.89 0.016792 0.045255
GO:0006479 protein methylation 1.69% (1/59) 5.89 0.016792 0.045255
GO:0018024 obsolete histone lysine N-methyltransferase activity 1.69% (1/59) 5.89 0.016792 0.045255
GO:0003697 single-stranded DNA binding 1.69% (1/59) 5.89 0.016792 0.045255
GO:1901265 nucleoside phosphate binding 11.86% (7/59) 1.38 0.017322 0.045573
GO:0000166 nucleotide binding 11.86% (7/59) 1.38 0.017322 0.045573
GO:0016570 histone modification 1.69% (1/59) 5.75 0.018455 0.046348
GO:0023051 regulation of signaling 1.69% (1/59) 5.75 0.018455 0.046348
GO:0009966 regulation of signal transduction 1.69% (1/59) 5.75 0.018455 0.046348
GO:0010646 regulation of cell communication 1.69% (1/59) 5.75 0.018455 0.046348
GO:0043168 anion binding 11.86% (7/59) 1.39 0.016736 0.047418
GO:0098796 membrane protein complex 3.39% (2/59) 3.2 0.020246 0.0476
GO:0009067 aspartate family amino acid biosynthetic process 1.69% (1/59) 5.62 0.020116 0.047803
GO:0098797 plasma membrane protein complex 1.69% (1/59) 5.62 0.020116 0.047803
GO:0018205 peptidyl-lysine modification 1.69% (1/59) 5.62 0.020116 0.047803
GO:0036094 small molecule binding 11.86% (7/59) 1.33 0.020717 0.048194
GO:0032559 adenyl ribonucleotide binding 10.17% (6/59) 1.49 0.019509 0.048444
GO:0071705 nitrogen compound transport 3.39% (2/59) 3.21 0.019954 0.048997
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_16 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_54 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_156 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_188 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_240 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_2 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_110 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_178 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_436 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_58 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (59) (download table)

InterPro Domains

GO Terms

Family Terms