Coexpression cluster: Cluster_41 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 21.21% (42/198) 3.62 0.0 0.0
GO:0005840 ribosome 17.68% (35/198) 4.01 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 17.68% (35/198) 3.83 0.0 0.0
GO:0043228 non-membrane-bounded organelle 17.68% (35/198) 3.83 0.0 0.0
GO:0003735 structural constituent of ribosome 17.17% (34/198) 3.91 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 20.71% (41/198) 3.38 0.0 0.0
GO:0006412 translation 16.67% (33/198) 3.89 0.0 0.0
GO:0044249 cellular biosynthetic process 22.73% (45/198) 3.09 0.0 0.0
GO:0043043 peptide biosynthetic process 16.67% (33/198) 3.86 0.0 0.0
GO:0005198 structural molecule activity 17.17% (34/198) 3.75 0.0 0.0
GO:0043604 amide biosynthetic process 16.67% (33/198) 3.84 0.0 0.0
GO:0006518 peptide metabolic process 16.67% (33/198) 3.79 0.0 0.0
GO:0043603 amide metabolic process 16.67% (33/198) 3.76 0.0 0.0
GO:1901576 organic substance biosynthetic process 22.73% (45/198) 2.93 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 23.74% (47/198) 2.83 0.0 0.0
GO:0009059 macromolecule biosynthetic process 17.68% (35/198) 3.34 0.0 0.0
GO:0009058 biosynthetic process 22.73% (45/198) 2.75 0.0 0.0
GO:0043229 intracellular organelle 17.68% (35/198) 3.01 0.0 0.0
GO:0043226 organelle 17.68% (35/198) 3.01 0.0 0.0
GO:0044237 cellular metabolic process 33.33% (66/198) 1.87 0.0 0.0
GO:0009523 photosystem II 6.06% (12/198) 5.88 0.0 0.0
GO:0008152 metabolic process 37.88% (75/198) 1.46 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 28.28% (56/198) 1.76 0.0 0.0
GO:0009521 photosystem 6.06% (12/198) 5.21 0.0 0.0
GO:0015979 photosynthesis 5.56% (11/198) 5.06 0.0 0.0
GO:0110165 cellular anatomical entity 25.25% (50/198) 1.71 0.0 0.0
GO:0006807 nitrogen compound metabolic process 28.79% (57/198) 1.55 0.0 0.0
GO:0009987 cellular process 35.86% (71/198) 1.29 0.0 0.0
GO:0005575 cellular_component 27.27% (54/198) 1.56 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 4.04% (8/198) 5.6 0.0 0.0
GO:0071704 organic substance metabolic process 31.31% (62/198) 1.3 0.0 0.0
GO:1990204 oxidoreductase complex 4.04% (8/198) 5.26 0.0 0.0
GO:0043170 macromolecule metabolic process 24.24% (48/198) 1.42 0.0 0.0
GO:0044238 primary metabolic process 28.79% (57/198) 1.24 0.0 0.0
GO:0019538 protein metabolic process 20.71% (41/198) 1.53 0.0 0.0
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.03% (6/198) 5.82 0.0 0.0
GO:0019898 extrinsic component of membrane 3.03% (6/198) 5.69 0.0 0.0
GO:0016853 isomerase activity 5.56% (11/198) 3.6 0.0 0.0
GO:0098796 membrane protein complex 6.06% (12/198) 3.15 0.0 0.0
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 3.03% (6/198) 5.15 0.0 0.0
GO:0016859 cis-trans isomerase activity 3.54% (7/198) 4.35 0.0 0.0
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 3.54% (7/198) 4.35 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 4.04% (8/198) 3.78 0.0 1e-06
GO:0016874 ligase activity 4.55% (9/198) 3.42 0.0 2e-06
GO:0008150 biological_process 40.4% (80/198) 0.75 0.0 2e-06
GO:0044281 small molecule metabolic process 7.07% (14/198) 2.35 1e-06 7e-06
GO:0019752 carboxylic acid metabolic process 5.56% (11/198) 2.62 2e-06 1.6e-05
GO:0043436 oxoacid metabolic process 5.56% (11/198) 2.62 2e-06 1.6e-05
GO:0006082 organic acid metabolic process 5.56% (11/198) 2.61 2e-06 1.6e-05
GO:1902494 catalytic complex 4.55% (9/198) 2.92 3e-06 2.5e-05
GO:0043039 tRNA aminoacylation 3.03% (6/198) 3.82 5e-06 3.1e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.03% (6/198) 3.82 5e-06 3.1e-05
GO:0004812 aminoacyl-tRNA ligase activity 3.03% (6/198) 3.82 5e-06 3.1e-05
GO:0043038 amino acid activation 3.03% (6/198) 3.82 5e-06 3.1e-05
GO:0033014 tetrapyrrole biosynthetic process 2.02% (4/198) 4.99 7e-06 4.7e-05
GO:0003723 RNA binding 7.58% (15/198) 1.99 7e-06 4.7e-05
GO:0006520 amino acid metabolic process 4.04% (8/198) 3.01 8e-06 4.9e-05
GO:0010207 photosystem II assembly 1.52% (3/198) 6.11 9e-06 5.7e-05
GO:0032991 protein-containing complex 7.07% (14/198) 1.95 1.9e-05 0.000115
GO:0033013 tetrapyrrole metabolic process 2.02% (4/198) 4.65 2e-05 0.000116
GO:0006399 tRNA metabolic process 3.03% (6/198) 3.39 2.5e-05 0.000147
GO:0051287 NAD binding 2.53% (5/198) 3.76 3.5e-05 0.000204
GO:0019843 rRNA binding 2.02% (4/198) 4.37 4.2e-05 0.000241
GO:0003674 molecular_function 55.05% (109/198) 0.43 4.4e-05 0.000248
GO:0018208 peptidyl-proline modification 2.02% (4/198) 4.3 5.2e-05 0.000276
GO:0000413 protein peptidyl-prolyl isomerization 2.02% (4/198) 4.3 5.2e-05 0.000276
GO:0006418 tRNA aminoacylation for protein translation 2.53% (5/198) 3.66 5.1e-05 0.000281
GO:0010206 photosystem II repair 1.01% (2/198) 7.11 7e-05 0.000362
GO:0030091 protein repair 1.01% (2/198) 7.11 7e-05 0.000362
GO:0016860 intramolecular oxidoreductase activity 1.52% (3/198) 5.03 0.000102 0.000515
GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.52% (3/198) 5.03 0.000102 0.000515
GO:0140098 catalytic activity, acting on RNA 4.04% (8/198) 2.45 0.000125 0.000619
GO:0006725 cellular aromatic compound metabolic process 7.07% (14/198) 1.68 0.00014 0.000676
GO:0046483 heterocycle metabolic process 7.07% (14/198) 1.68 0.000138 0.000677
GO:1901360 organic cyclic compound metabolic process 7.07% (14/198) 1.65 0.000171 0.000817
GO:0019438 aromatic compound biosynthetic process 4.04% (8/198) 2.33 0.000213 0.001006
GO:0008883 glutamyl-tRNA reductase activity 1.01% (2/198) 6.37 0.000231 0.00106
GO:0034660 ncRNA metabolic process 3.03% (6/198) 2.82 0.000228 0.001062
GO:0018130 heterocycle biosynthetic process 4.04% (8/198) 2.31 0.000241 0.001093
GO:0004751 ribose-5-phosphate isomerase activity 1.01% (2/198) 6.11 0.000345 0.001526
GO:0009052 pentose-phosphate shunt, non-oxidative branch 1.01% (2/198) 6.11 0.000345 0.001526
GO:1901362 organic cyclic compound biosynthetic process 4.04% (8/198) 2.18 0.000428 0.001867
GO:0016774 phosphotransferase activity, carboxyl group as acceptor 1.01% (2/198) 5.88 0.000482 0.002053
GO:0004618 phosphoglycerate kinase activity 1.01% (2/198) 5.88 0.000482 0.002053
GO:0018193 peptidyl-amino acid modification 2.02% (4/198) 3.41 0.000574 0.002419
GO:0006091 generation of precursor metabolites and energy 2.02% (4/198) 3.18 0.001025 0.004265
GO:0016491 oxidoreductase activity 8.08% (16/198) 1.25 0.001241 0.005106
GO:0140640 catalytic activity, acting on a nucleic acid 4.04% (8/198) 1.84 0.001991 0.008098
GO:0005509 calcium ion binding 3.03% (6/198) 2.14 0.002621 0.010545
GO:0005261 monoatomic cation channel activity 1.01% (2/198) 4.37 0.004182 0.016275
GO:0015252 proton channel activity 1.01% (2/198) 4.37 0.004182 0.016275
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.01% (2/198) 4.37 0.004182 0.016275
GO:0098809 nitrite reductase activity 0.51% (1/198) 7.69 0.00484 0.017683
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 0.51% (1/198) 7.69 0.00484 0.017683
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 0.51% (1/198) 7.69 0.00484 0.017683
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 0.51% (1/198) 7.69 0.00484 0.017683
GO:0008942 nitrite reductase [NAD(P)H] activity 0.51% (1/198) 7.69 0.00484 0.017683
GO:0009512 cytochrome b6f complex 0.51% (1/198) 7.69 0.00484 0.017683
GO:0044283 small molecule biosynthetic process 2.02% (4/198) 2.27 0.009782 0.035374
GO:0015986 proton motive force-driven ATP synthesis 1.01% (2/198) 3.65 0.011153 0.039928
GO:0065003 protein-containing complex assembly 1.52% (3/198) 2.68 0.011804 0.041839
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.51% (1/198) 6.11 0.014452 0.047033
GO:0070567 cytidylyltransferase activity 0.51% (1/198) 6.11 0.014452 0.047033
GO:0006729 tetrahydrobiopterin biosynthetic process 0.51% (1/198) 6.11 0.014452 0.047033
GO:0034311 diol metabolic process 0.51% (1/198) 6.11 0.014452 0.047033
GO:0034312 diol biosynthetic process 0.51% (1/198) 6.11 0.014452 0.047033
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 0.51% (1/198) 6.11 0.014452 0.047033
GO:0004418 hydroxymethylbilane synthase activity 0.51% (1/198) 6.11 0.014452 0.047033
GO:0046146 tetrahydrobiopterin metabolic process 0.51% (1/198) 6.11 0.014452 0.047033
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.01% (2/198) 3.41 0.015359 0.047812
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.01% (2/198) 3.41 0.015359 0.047812
GO:0006754 ATP biosynthetic process 1.01% (2/198) 3.41 0.015359 0.047812
GO:0009142 nucleoside triphosphate biosynthetic process 1.01% (2/198) 3.41 0.015359 0.047812
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.01% (2/198) 3.41 0.015359 0.047812
GO:0016070 RNA metabolic process 3.54% (7/198) 1.47 0.014206 0.049861
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_57 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_59 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_74 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.031 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.046 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.024 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.026 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_213 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_214 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_241 0.029 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_287 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_42 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_75 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_159 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_12 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_30 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (198) (download table)

InterPro Domains

GO Terms

Family Terms