Coexpression cluster: Cluster_211 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051649 establishment of localization in cell 3.31% (8/242) 2.64 5e-05 0.006767
GO:0046907 intracellular transport 3.31% (8/242) 2.64 5e-05 0.006767
GO:0030127 COPII vesicle coat 1.24% (3/242) 5.18 7.1e-05 0.007271
GO:0006974 DNA damage response 2.07% (5/242) 3.3 0.000164 0.008402
GO:0033554 cellular response to stress 2.07% (5/242) 3.3 0.000164 0.008402
GO:0051716 cellular response to stimulus 2.07% (5/242) 3.3 0.000164 0.008402
GO:0008104 protein localization 2.89% (7/242) 2.43 0.00035 0.009569
GO:0033036 macromolecule localization 2.89% (7/242) 2.43 0.00035 0.009569
GO:0045184 establishment of protein localization 2.89% (7/242) 2.43 0.00035 0.009569
GO:0070727 cellular macromolecule localization 2.89% (7/242) 2.43 0.00035 0.009569
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.24% (3/242) 4.4 0.000378 0.009676
GO:0006281 DNA repair 2.07% (5/242) 3.38 0.000124 0.01013
GO:0005488 binding 34.71% (84/242) 0.48 0.000427 0.010309
GO:0051641 cellular localization 3.31% (8/242) 2.28 0.000272 0.011149
GO:0015031 protein transport 2.89% (7/242) 2.47 0.000305 0.011354
GO:0140657 ATP-dependent activity 4.13% (10/242) 1.86 0.000505 0.011499
GO:0003676 nucleic acid binding 12.81% (31/242) 0.97 0.000262 0.011932
GO:1901681 sulfur compound binding 1.24% (3/242) 4.18 0.000601 0.01296
GO:1901363 heterocyclic compound binding 22.31% (54/242) 0.62 0.000771 0.013173
GO:0097159 organic cyclic compound binding 22.31% (54/242) 0.62 0.000771 0.013173
GO:0090304 nucleic acid metabolic process 4.96% (12/242) 1.59 0.000733 0.013657
GO:0004176 ATP-dependent peptidase activity 1.24% (3/242) 4.13 0.000667 0.013673
GO:0006302 double-strand break repair 0.83% (2/242) 5.59 0.000718 0.014014
GO:0006886 intracellular protein transport 2.89% (7/242) 2.94 3.9e-05 0.016184
GO:0006725 cellular aromatic compound metabolic process 5.79% (14/242) 1.39 0.001047 0.017178
GO:1901360 organic cyclic compound metabolic process 5.79% (14/242) 1.36 0.001261 0.017238
GO:0071705 nitrogen compound transport 2.89% (7/242) 2.11 0.001304 0.017251
GO:0040008 regulation of growth 0.83% (2/242) 5.23 0.001221 0.017262
GO:0045927 positive regulation of growth 0.83% (2/242) 5.23 0.001221 0.017262
GO:0030120 vesicle coat 1.24% (3/242) 3.78 0.00137 0.017549
GO:0008094 ATP-dependent activity, acting on DNA 1.65% (4/242) 3.13 0.001153 0.018181
GO:0006139 nucleobase-containing compound metabolic process 5.37% (13/242) 1.44 0.001205 0.018297
GO:0048193 Golgi vesicle transport 1.24% (3/242) 3.66 0.001719 0.020729
GO:0071702 organic substance transport 2.89% (7/242) 2.04 0.001698 0.021096
GO:0008270 zinc ion binding 3.72% (9/242) 1.69 0.002143 0.024408
GO:0006259 DNA metabolic process 2.07% (5/242) 2.48 0.002112 0.024744
GO:0000062 fatty-acyl-CoA binding 0.83% (2/242) 4.7 0.002604 0.026695
GO:0120227 acyl-CoA binding 0.83% (2/242) 4.7 0.002604 0.026695
GO:1901567 fatty acid derivative binding 0.83% (2/242) 4.7 0.002604 0.026695
GO:0003678 DNA helicase activity 0.83% (2/242) 4.7 0.002604 0.026695
GO:0008237 metallopeptidase activity 1.65% (4/242) 2.79 0.002795 0.027945
GO:0046483 heterocycle metabolic process 5.37% (13/242) 1.29 0.002945 0.028752
GO:0004222 metalloendopeptidase activity 1.24% (3/242) 3.18 0.0045 0.040997
GO:0030117 membrane coat 1.24% (3/242) 3.18 0.0045 0.040997
GO:0005739 mitochondrion 0.83% (2/242) 4.31 0.004471 0.042628
GO:0048518 positive regulation of biological process 0.83% (2/242) 4.23 0.00501 0.043705
GO:0140097 catalytic activity, acting on DNA 1.65% (4/242) 2.56 0.004948 0.044101
GO:0034227 tRNA thio-modification 0.41% (1/242) 7.4 0.005916 0.044919
GO:0033617 mitochondrial cytochrome c oxidase assembly 0.41% (1/242) 7.4 0.005916 0.044919
GO:0004334 fumarylacetoacetase activity 0.41% (1/242) 7.4 0.005916 0.044919
GO:0008535 respiratory chain complex IV assembly 0.41% (1/242) 7.4 0.005916 0.044919
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 0.41% (1/242) 7.4 0.005916 0.044919
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 0.41% (1/242) 7.4 0.005916 0.044919
GO:0004386 helicase activity 1.24% (3/242) 3.08 0.00546 0.046634
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_23 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_107 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_108 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_109 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_110 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_114 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_118 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_126 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_127 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_137 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_139 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_148 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_157 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_180 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_186 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_223 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_226 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_227 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_240 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_261 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_262 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_263 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_278 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_172 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_188 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (242) (download table)

InterPro Domains

GO Terms

Family Terms