Coexpression cluster: Cluster_143 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140101 catalytic activity, acting on a tRNA 9.86% (14/142) 5.5 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 8.45% (12/142) 5.72 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 8.45% (12/142) 5.72 0.0 0.0
GO:0043039 tRNA aminoacylation 8.45% (12/142) 5.72 0.0 0.0
GO:0043038 amino acid activation 8.45% (12/142) 5.72 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 7.75% (11/142) 5.84 0.0 0.0
GO:0006399 tRNA metabolic process 8.45% (12/142) 5.17 0.0 0.0
GO:0034660 ncRNA metabolic process 9.15% (13/142) 4.73 0.0 0.0
GO:0006520 amino acid metabolic process 9.15% (13/142) 4.71 0.0 0.0
GO:0016874 ligase activity 8.45% (12/142) 4.82 0.0 0.0
GO:0016070 RNA metabolic process 11.97% (17/142) 3.58 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 18.31% (26/142) 2.57 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 16.2% (23/142) 2.8 0.0 0.0
GO:0046483 heterocycle metabolic process 16.2% (23/142) 2.8 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 16.2% (23/142) 2.77 0.0 0.0
GO:0043436 oxoacid metabolic process 9.15% (13/142) 4.04 0.0 0.0
GO:0019752 carboxylic acid metabolic process 9.15% (13/142) 4.04 0.0 0.0
GO:0006082 organic acid metabolic process 9.15% (13/142) 4.03 0.0 0.0
GO:0044281 small molecule metabolic process 9.86% (14/142) 3.43 0.0 0.0
GO:0036094 small molecule binding 19.72% (28/142) 2.06 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 17.61% (25/142) 2.19 0.0 0.0
GO:0043168 anion binding 19.01% (27/142) 2.07 0.0 0.0
GO:1901265 nucleoside phosphate binding 19.01% (27/142) 2.06 0.0 0.0
GO:0000166 nucleotide binding 19.01% (27/142) 2.06 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 13.38% (19/142) 2.62 0.0 0.0
GO:0090304 nucleic acid metabolic process 12.68% (18/142) 2.72 0.0 0.0
GO:0017076 purine nucleotide binding 18.31% (26/142) 2.08 0.0 0.0
GO:0032555 purine ribonucleotide binding 17.61% (25/142) 2.11 0.0 0.0
GO:0032553 ribonucleotide binding 17.61% (25/142) 2.1 0.0 0.0
GO:0097367 carbohydrate derivative binding 17.61% (25/142) 2.09 0.0 0.0
GO:0044237 cellular metabolic process 21.83% (31/142) 1.77 0.0 0.0
GO:0003674 molecular_function 53.52% (76/142) 0.86 0.0 0.0
GO:0005524 ATP binding 15.49% (22/142) 2.19 0.0 0.0
GO:0009987 cellular process 26.76% (38/142) 1.46 0.0 0.0
GO:0030554 adenyl nucleotide binding 16.2% (23/142) 2.07 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 15.49% (22/142) 2.1 0.0 0.0
GO:0043167 ion binding 23.94% (34/142) 1.51 0.0 0.0
GO:0097159 organic cyclic compound binding 29.58% (42/142) 1.29 0.0 0.0
GO:1901363 heterocyclic compound binding 29.58% (42/142) 1.29 0.0 0.0
GO:0005488 binding 38.73% (55/142) 1.02 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 2.82% (4/142) 6.36 0.0 1e-06
GO:0033013 tetrapyrrole metabolic process 2.82% (4/142) 5.85 1e-06 4e-06
GO:0006807 nitrogen compound metabolic process 20.42% (29/142) 1.44 1e-06 5e-06
GO:0008150 biological_process 31.69% (45/142) 1.03 1e-06 7e-06
GO:0006779 porphyrin-containing compound biosynthetic process 2.11% (3/142) 6.72 2e-06 1.5e-05
GO:0008152 metabolic process 23.24% (33/142) 1.22 3e-06 1.9e-05
GO:0006457 protein folding 2.82% (4/142) 4.99 8e-06 4.7e-05
GO:0006778 porphyrin-containing compound metabolic process 2.11% (3/142) 5.94 1.4e-05 8.6e-05
GO:1901564 organonitrogen compound metabolic process 15.49% (22/142) 1.45 1.7e-05 0.000103
GO:0019438 aromatic compound biosynthetic process 4.93% (7/142) 3.05 2.4e-05 0.000133
GO:0140098 catalytic activity, acting on RNA 10.56% (15/142) 1.83 2.3e-05 0.000133
GO:0019898 extrinsic component of membrane 2.11% (3/142) 5.72 2.3e-05 0.000135
GO:0140640 catalytic activity, acting on a nucleic acid 11.27% (16/142) 1.74 2.6e-05 0.000145
GO:0018130 heterocycle biosynthetic process 4.93% (7/142) 3.0 3e-05 0.000163
GO:0044271 cellular nitrogen compound biosynthetic process 7.04% (10/142) 2.32 3.5e-05 0.000187
GO:0071704 organic substance metabolic process 20.42% (29/142) 1.14 3.8e-05 0.000199
GO:0009654 photosystem II oxygen evolving complex 2.11% (3/142) 5.44 4.3e-05 0.00022
GO:0004813 alanine-tRNA ligase activity 1.41% (2/142) 7.36 4.9e-05 0.000243
GO:0006419 alanyl-tRNA aminoacylation 1.41% (2/142) 7.36 4.9e-05 0.000243
GO:1901362 organic cyclic compound biosynthetic process 4.93% (7/142) 2.87 5.3e-05 0.000257
GO:0044249 cellular biosynthetic process 7.75% (11/142) 2.09 6.3e-05 0.0003
GO:1990204 oxidoreductase complex 2.11% (3/142) 5.2 7.2e-05 0.000336
GO:0009523 photosystem II 2.11% (3/142) 5.0 0.00011 0.000509
GO:0043170 macromolecule metabolic process 16.2% (23/142) 1.22 0.000126 0.000575
GO:1901576 organic substance biosynthetic process 7.75% (11/142) 1.94 0.000155 0.000695
GO:1901566 organonitrogen compound biosynthetic process 5.63% (8/142) 2.27 0.000272 0.0012
GO:0004045 aminoacyl-tRNA hydrolase activity 1.41% (2/142) 6.13 0.000341 0.001482
GO:0003723 RNA binding 5.63% (8/142) 2.22 0.000347 0.001484
GO:0003690 double-stranded DNA binding 2.11% (3/142) 4.4 0.000393 0.001634
GO:0009058 biosynthetic process 7.75% (11/142) 1.78 0.000392 0.001652
GO:0009521 photosystem 2.11% (3/142) 4.2 0.000585 0.002396
GO:0031072 heat shock protein binding 1.41% (2/142) 5.62 0.000725 0.002931
GO:0015979 photosynthesis 2.11% (3/142) 4.07 0.000775 0.003087
GO:0140662 ATP-dependent protein folding chaperone 2.11% (3/142) 3.77 0.001408 0.005537
GO:0005737 cytoplasm 2.11% (3/142) 3.72 0.001564 0.00607
GO:0044183 protein folding chaperone 2.11% (3/142) 3.69 0.001646 0.006304
GO:0016853 isomerase activity 2.82% (4/142) 2.99 0.001693 0.0064
GO:0044238 primary metabolic process 16.9% (24/142) 0.92 0.001818 0.006782
GO:0052689 carboxylic ester hydrolase activity 2.11% (3/142) 3.44 0.002729 0.010054
GO:0003824 catalytic activity 24.65% (35/142) 0.67 0.003157 0.011485
GO:0016836 hydro-lyase activity 1.41% (2/142) 4.55 0.003286 0.011805
GO:0004109 coproporphyrinogen oxidase activity 0.7% (1/142) 7.94 0.004072 0.013165
GO:0006438 valyl-tRNA aminoacylation 0.7% (1/142) 7.94 0.004072 0.013165
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.7% (1/142) 7.94 0.004072 0.013165
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 0.7% (1/142) 7.94 0.004072 0.013165
GO:0015995 chlorophyll biosynthetic process 0.7% (1/142) 7.94 0.004072 0.013165
GO:0004832 valine-tRNA ligase activity 0.7% (1/142) 7.94 0.004072 0.013165
GO:0004655 porphobilinogen synthase activity 0.7% (1/142) 7.94 0.004072 0.013165
GO:0051082 unfolded protein binding 1.41% (2/142) 4.42 0.003938 0.013806
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 1.41% (2/142) 4.42 0.003938 0.013806
GO:0016746 acyltransferase activity 2.82% (4/142) 2.44 0.006537 0.020905
GO:0006352 DNA-templated transcription initiation 1.41% (2/142) 4.03 0.006646 0.02102
GO:0004853 uroporphyrinogen decarboxylase activity 0.7% (1/142) 6.94 0.008127 0.024132
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.7% (1/142) 6.94 0.008127 0.024132
GO:0004749 ribose phosphate diphosphokinase activity 0.7% (1/142) 6.94 0.008127 0.024132
GO:0004827 proline-tRNA ligase activity 0.7% (1/142) 6.94 0.008127 0.024132
GO:0006433 prolyl-tRNA aminoacylation 0.7% (1/142) 6.94 0.008127 0.024132
GO:0045184 establishment of protein localization 2.11% (3/142) 2.84 0.008687 0.024784
GO:0008104 protein localization 2.11% (3/142) 2.84 0.008687 0.024784
GO:0033036 macromolecule localization 2.11% (3/142) 2.84 0.008687 0.024784
GO:0070727 cellular macromolecule localization 2.11% (3/142) 2.84 0.008687 0.024784
GO:0015031 protein transport 2.11% (3/142) 2.88 0.008013 0.025074
GO:0046451 diaminopimelate metabolic process 0.7% (1/142) 6.36 0.012166 0.031055
GO:0042803 protein homodimerization activity 0.7% (1/142) 6.36 0.012166 0.031055
GO:0042802 identical protein binding 0.7% (1/142) 6.36 0.012166 0.031055
GO:0006553 lysine metabolic process 0.7% (1/142) 6.36 0.012166 0.031055
GO:0000774 adenyl-nucleotide exchange factor activity 0.7% (1/142) 6.36 0.012166 0.031055
GO:0009085 lysine biosynthetic process 0.7% (1/142) 6.36 0.012166 0.031055
GO:0009089 lysine biosynthetic process via diaminopimelate 0.7% (1/142) 6.36 0.012166 0.031055
GO:0006355 regulation of DNA-templated transcription 4.23% (6/142) 1.69 0.011276 0.031251
GO:2001141 regulation of RNA biosynthetic process 4.23% (6/142) 1.69 0.011276 0.031251
GO:0003676 nucleic acid binding 12.68% (18/142) 0.85 0.011202 0.031648
GO:1902494 catalytic complex 2.11% (3/142) 2.64 0.012547 0.031749
GO:0016829 lyase activity 2.11% (3/142) 2.68 0.011709 0.032144
GO:0051252 regulation of RNA metabolic process 4.23% (6/142) 1.67 0.01208 0.032854
GO:0019219 regulation of nucleobase-containing compound metabolic process 4.23% (6/142) 1.63 0.013551 0.033995
GO:0016835 carbon-oxygen lyase activity 1.41% (2/142) 3.45 0.014535 0.035247
GO:0045182 translation regulator activity 1.41% (2/142) 3.45 0.014535 0.035247
GO:0008135 translation factor activity, RNA binding 1.41% (2/142) 3.45 0.014535 0.035247
GO:0090079 translation regulator activity, nucleic acid binding 1.41% (2/142) 3.45 0.014535 0.035247
GO:0051536 iron-sulfur cluster binding 1.41% (2/142) 3.42 0.015156 0.03615
GO:0051540 metal cluster binding 1.41% (2/142) 3.42 0.015156 0.03615
GO:0015994 chlorophyll metabolic process 0.7% (1/142) 5.94 0.016188 0.036518
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 0.7% (1/142) 5.94 0.016188 0.036518
GO:0046148 pigment biosynthetic process 0.7% (1/142) 5.94 0.016188 0.036518
GO:0016778 diphosphotransferase activity 0.7% (1/142) 5.94 0.016188 0.036518
GO:0071705 nitrogen compound transport 2.11% (3/142) 2.53 0.015584 0.036572
GO:0005509 calcium ion binding 2.11% (3/142) 2.53 0.015584 0.036572
GO:0098796 membrane protein complex 2.11% (3/142) 2.51 0.015908 0.037035
GO:0009889 regulation of biosynthetic process 4.23% (6/142) 1.55 0.017463 0.037643
GO:0010468 regulation of gene expression 4.23% (6/142) 1.55 0.017463 0.037643
GO:0031326 regulation of cellular biosynthetic process 4.23% (6/142) 1.55 0.017463 0.037643
GO:0010556 regulation of macromolecule biosynthetic process 4.23% (6/142) 1.55 0.017463 0.037643
GO:0080090 regulation of primary metabolic process 4.23% (6/142) 1.55 0.017161 0.038121
GO:0051171 regulation of nitrogen compound metabolic process 4.23% (6/142) 1.55 0.017161 0.038121
GO:0002161 aminoacyl-tRNA editing activity 0.7% (1/142) 5.62 0.020195 0.04321
GO:0051641 cellular localization 2.11% (3/142) 2.38 0.020473 0.043486
GO:0060255 regulation of macromolecule metabolic process 4.23% (6/142) 1.48 0.02121 0.044404
GO:0031323 regulation of cellular metabolic process 4.23% (6/142) 1.48 0.02121 0.044404
GO:0019222 regulation of metabolic process 4.23% (6/142) 1.48 0.021384 0.044449
GO:0071702 organic substance transport 2.11% (3/142) 2.31 0.023198 0.047876
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 0.7% (1/142) 5.36 0.024185 0.048203
GO:0008079 translation termination factor activity 0.7% (1/142) 5.36 0.024185 0.048203
GO:0003747 translation release factor activity 0.7% (1/142) 5.36 0.024185 0.048203
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 0.7% (1/142) 5.36 0.024185 0.048203
GO:0060590 ATPase regulator activity 0.7% (1/142) 5.36 0.024185 0.048203
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_42 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_75 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_32 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_40 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_54 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_64 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_67 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_88 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_97 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_196 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_216 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (142) (download table)

InterPro Domains

GO Terms

Family Terms