Coexpression cluster: Cluster_75 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0019898 extrinsic component of membrane 2.44% (4/164) 5.98 0.0 6.1e-05
GO:0009523 photosystem II 3.05% (5/164) 5.17 0.0 8.2e-05
GO:0009654 photosystem II oxygen evolving complex 2.44% (4/164) 5.64 1e-06 0.000114
GO:1990204 oxidoreductase complex 2.44% (4/164) 4.85 1.1e-05 0.000345
GO:0051540 metal cluster binding 3.05% (5/164) 4.31 6e-06 0.000346
GO:0051536 iron-sulfur cluster binding 3.05% (5/164) 4.31 6e-06 0.000346
GO:0006082 organic acid metabolic process 5.49% (9/164) 2.73 1e-05 0.000382
GO:0009521 photosystem 3.05% (5/164) 4.1 1.1e-05 0.000383
GO:0043436 oxoacid metabolic process 5.49% (9/164) 2.73 1e-05 0.000426
GO:0019752 carboxylic acid metabolic process 5.49% (9/164) 2.73 1e-05 0.000426
GO:0004812 aminoacyl-tRNA ligase activity 3.05% (5/164) 3.93 2.1e-05 0.000449
GO:0043039 tRNA aminoacylation 3.05% (5/164) 3.93 2.1e-05 0.000449
GO:0043038 amino acid activation 3.05% (5/164) 3.93 2.1e-05 0.000449
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.05% (5/164) 3.93 2.1e-05 0.000449
GO:0016874 ligase activity 3.66% (6/164) 3.38 2.7e-05 0.000542
GO:0140101 catalytic activity, acting on a tRNA 3.05% (5/164) 3.54 7.5e-05 0.001429
GO:0044281 small molecule metabolic process 6.1% (10/164) 2.17 9e-05 0.001613
GO:0006399 tRNA metabolic process 3.05% (5/164) 3.46 9.8e-05 0.001665
GO:0005525 GTP binding 4.27% (7/164) 2.66 0.000131 0.001906
GO:0032561 guanyl ribonucleotide binding 4.27% (7/164) 2.66 0.000131 0.001906
GO:0019001 guanyl nucleotide binding 4.27% (7/164) 2.64 0.000147 0.002044
GO:0006520 amino acid metabolic process 3.66% (6/164) 2.97 0.000129 0.00207
GO:0006418 tRNA aminoacylation for protein translation 2.44% (4/164) 3.68 0.000278 0.003689
GO:0015979 photosynthesis 2.44% (4/164) 3.6 0.00034 0.004326
GO:0034660 ncRNA metabolic process 3.05% (5/164) 2.99 0.000439 0.005356
GO:1902494 catalytic complex 3.05% (5/164) 2.62 0.001402 0.016448
GO:0098809 nitrite reductase activity 0.61% (1/164) 7.89 0.004215 0.036729
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 0.61% (1/164) 7.89 0.004215 0.036729
GO:0008942 nitrite reductase [NAD(P)H] activity 0.61% (1/164) 7.89 0.004215 0.036729
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 0.61% (1/164) 7.89 0.004215 0.036729
GO:0032954 regulation of cytokinetic process 0.61% (1/164) 7.89 0.004215 0.036729
GO:0032955 regulation of division septum assembly 0.61% (1/164) 7.89 0.004215 0.036729
GO:1901891 regulation of cell septum assembly 0.61% (1/164) 7.89 0.004215 0.036729
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.61% (1/164) 7.89 0.004215 0.036729
GO:0140098 catalytic activity, acting on RNA 3.05% (5/164) 2.31 0.003599 0.04065
GO:0003824 catalytic activity 26.83% (44/164) 0.53 0.005612 0.047548
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_74 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_167 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_213 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_42 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_118 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_12 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_143 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (164) (download table)

InterPro Domains

GO Terms

Family Terms