Coexpression cluster: Cluster_42 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 21.69% (36/166) 3.82 0.0 0.0
GO:0005840 ribosome 16.87% (28/166) 4.22 0.0 0.0
GO:0043228 non-membrane-bounded organelle 16.87% (28/166) 4.0 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 16.87% (28/166) 4.0 0.0 0.0
GO:0044249 cellular biosynthetic process 22.29% (37/166) 3.19 0.0 0.0
GO:0006518 peptide metabolic process 16.27% (27/166) 4.0 0.0 0.0
GO:0003735 structural constituent of ribosome 15.66% (26/166) 4.07 0.0 0.0
GO:0043603 amide metabolic process 16.27% (27/166) 3.96 0.0 0.0
GO:0043043 peptide biosynthetic process 15.66% (26/166) 4.05 0.0 0.0
GO:0043604 amide biosynthetic process 15.66% (26/166) 4.03 0.0 0.0
GO:1901576 organic substance biosynthetic process 22.29% (37/166) 3.04 0.0 0.0
GO:0006412 translation 15.06% (25/166) 4.02 0.0 0.0
GO:0009058 biosynthetic process 22.89% (38/166) 2.92 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 18.67% (31/166) 3.39 0.0 0.0
GO:0005198 structural molecule activity 15.66% (26/166) 3.87 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 22.29% (37/166) 2.86 0.0 0.0
GO:0043229 intracellular organelle 16.87% (28/166) 3.26 0.0 0.0
GO:0043226 organelle 16.87% (28/166) 3.26 0.0 0.0
GO:0009059 macromolecule biosynthetic process 15.66% (26/166) 3.34 0.0 0.0
GO:0044237 cellular metabolic process 28.31% (47/166) 1.66 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 27.11% (45/166) 1.7 0.0 0.0
GO:0006807 nitrogen compound metabolic process 28.31% (47/166) 1.54 0.0 0.0
GO:0008152 metabolic process 32.53% (54/166) 1.3 0.0 0.0
GO:0110165 cellular anatomical entity 21.69% (36/166) 1.73 0.0 0.0
GO:0071704 organic substance metabolic process 30.72% (51/166) 1.33 0.0 0.0
GO:0009987 cellular process 32.53% (54/166) 1.23 0.0 0.0
GO:0005575 cellular_component 22.29% (37/166) 1.5 0.0 0.0
GO:0006520 amino acid metabolic process 6.02% (10/166) 3.69 0.0 0.0
GO:0019752 carboxylic acid metabolic process 7.23% (12/166) 3.13 0.0 0.0
GO:0043436 oxoacid metabolic process 7.23% (12/166) 3.13 0.0 0.0
GO:0006082 organic acid metabolic process 7.23% (12/166) 3.13 0.0 0.0
GO:0044238 primary metabolic process 27.71% (46/166) 1.23 0.0 0.0
GO:0003674 molecular_function 56.02% (93/166) 0.61 0.0 3e-06
GO:0044281 small molecule metabolic process 7.83% (13/166) 2.53 1e-06 4e-06
GO:0043170 macromolecule metabolic process 21.08% (35/166) 1.24 1e-06 1.2e-05
GO:0033014 tetrapyrrole biosynthetic process 2.41% (4/166) 5.41 2e-06 1.8e-05
GO:0033013 tetrapyrrole metabolic process 2.41% (4/166) 5.12 5e-06 4e-05
GO:0008150 biological_process 36.75% (61/166) 0.75 8e-06 5.9e-05
GO:0019538 protein metabolic process 17.47% (29/166) 1.28 8e-06 5.9e-05
GO:0004853 uroporphyrinogen decarboxylase activity 1.2% (2/166) 7.87 1.8e-05 0.000124
GO:0016053 organic acid biosynthetic process 3.61% (6/166) 3.48 1.8e-05 0.000125
GO:0046394 carboxylic acid biosynthetic process 3.61% (6/166) 3.48 1.8e-05 0.000125
GO:0006457 protein folding 2.41% (4/166) 4.48 3.2e-05 0.000211
GO:0044283 small molecule biosynthetic process 3.61% (6/166) 3.18 5.7e-05 0.000373
GO:0008652 amino acid biosynthetic process 2.41% (4/166) 3.94 0.000138 0.000883
GO:0006725 cellular aromatic compound metabolic process 7.23% (12/166) 1.76 0.000253 0.001585
GO:0019843 rRNA binding 1.81% (3/166) 4.55 0.000284 0.001743
GO:1901360 organic cyclic compound metabolic process 7.23% (12/166) 1.7 0.00037 0.002223
GO:0006779 porphyrin-containing compound biosynthetic process 1.2% (2/166) 5.7 0.000639 0.003406
GO:0016872 intramolecular lyase activity 1.2% (2/166) 5.7 0.000639 0.003406
GO:0006547 histidine metabolic process 1.2% (2/166) 5.7 0.000639 0.003406
GO:0000105 histidine biosynthetic process 1.2% (2/166) 5.7 0.000639 0.003406
GO:0016853 isomerase activity 3.01% (5/166) 2.9 0.000588 0.003458
GO:0003723 RNA binding 6.02% (10/166) 1.82 0.000609 0.003509
GO:0016769 transferase activity, transferring nitrogenous groups 1.2% (2/166) 5.41 0.00097 0.004902
GO:0008483 transaminase activity 1.2% (2/166) 5.41 0.00097 0.004902
GO:0046483 heterocycle metabolic process 6.63% (11/166) 1.63 0.00097 0.005079
GO:0006778 porphyrin-containing compound metabolic process 1.2% (2/166) 5.07 0.001592 0.007904
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.81% (3/166) 3.6 0.001981 0.009508
GO:0016859 cis-trans isomerase activity 1.81% (3/166) 3.6 0.001981 0.009508
GO:0019438 aromatic compound biosynthetic process 3.61% (6/166) 2.16 0.002414 0.011215
GO:0003824 catalytic activity 27.71% (46/166) 0.58 0.00241 0.011377
GO:0016874 ligase activity 2.41% (4/166) 2.77 0.002889 0.013208
GO:0009072 aromatic amino acid metabolic process 1.2% (2/166) 4.55 0.003268 0.014707
GO:0019867 outer membrane 1.2% (2/166) 4.48 0.003602 0.01596
GO:0003964 RNA-directed DNA polymerase activity 0.6% (1/166) 7.87 0.004266 0.018069
GO:0004834 tryptophan synthase activity 0.6% (1/166) 7.87 0.004266 0.018069
GO:0004418 hydroxymethylbilane synthase activity 0.6% (1/166) 7.87 0.004266 0.018069
GO:1901362 organic cyclic compound biosynthetic process 3.61% (6/166) 1.97 0.004632 0.018273
GO:0043039 tRNA aminoacylation 1.81% (3/166) 3.17 0.004589 0.018358
GO:0004812 aminoacyl-tRNA ligase activity 1.81% (3/166) 3.17 0.004589 0.018358
GO:0043038 amino acid activation 1.81% (3/166) 3.17 0.004589 0.018358
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.81% (3/166) 3.17 0.004589 0.018358
GO:0018208 peptidyl-proline modification 1.2% (2/166) 4.07 0.006358 0.024415
GO:0000413 protein peptidyl-prolyl isomerization 1.2% (2/166) 4.07 0.006358 0.024415
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.6% (1/166) 6.87 0.008514 0.031846
GO:0004655 porphobilinogen synthase activity 0.6% (1/166) 6.87 0.008514 0.031846
GO:0140101 catalytic activity, acting on a tRNA 1.81% (3/166) 2.79 0.009617 0.035509
GO:0016836 hydro-lyase activity 1.2% (2/166) 3.74 0.009815 0.035781
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.2% (2/166) 3.7 0.010363 0.037308
GO:0009507 chloroplast 0.6% (1/166) 6.29 0.012745 0.038234
GO:0009536 plastid 0.6% (1/166) 6.29 0.012745 0.038234
GO:0051920 peroxiredoxin activity 0.6% (1/166) 6.29 0.012745 0.038234
GO:0003879 ATP phosphoribosyltransferase activity 0.6% (1/166) 6.29 0.012745 0.038234
GO:0004000 adenosine deaminase activity 0.6% (1/166) 6.29 0.012745 0.038234
GO:0042586 peptide deformylase activity 0.6% (1/166) 6.29 0.012745 0.038234
GO:0004019 adenylosuccinate synthase activity 0.6% (1/166) 6.29 0.012745 0.038234
GO:0006553 lysine metabolic process 0.6% (1/166) 6.29 0.012745 0.038234
GO:0046451 diaminopimelate metabolic process 0.6% (1/166) 6.29 0.012745 0.038234
GO:0009085 lysine biosynthetic process 0.6% (1/166) 6.29 0.012745 0.038234
GO:0009089 lysine biosynthetic process via diaminopimelate 0.6% (1/166) 6.29 0.012745 0.038234
GO:0016829 lyase activity 2.41% (4/166) 2.22 0.011016 0.039168
GO:0006399 tRNA metabolic process 1.81% (3/166) 2.7 0.011225 0.039426
GO:0016831 carboxy-lyase activity 1.2% (2/166) 3.59 0.012088 0.041944
GO:0000287 magnesium ion binding 1.81% (3/166) 2.65 0.012379 0.042441
GO:0018130 heterocycle biosynthetic process 3.01% (5/166) 1.86 0.012628 0.042787
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 1.2% (2/166) 3.38 0.015883 0.047158
GO:0042430 indole-containing compound metabolic process 0.6% (1/166) 5.87 0.016957 0.048352
GO:0006586 indolalkylamine metabolic process 0.6% (1/166) 5.87 0.016957 0.048352
GO:0006568 tryptophan metabolic process 0.6% (1/166) 5.87 0.016957 0.048352
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 0.6% (1/166) 5.87 0.016957 0.048352
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_81 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_213 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_63 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_67 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_72 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_75 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_113 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_165 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_203 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_246 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_143 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (166) (download table)

InterPro Domains

GO Terms

Family Terms