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Aliases : AtTRM5c, TRM5c
Description : tRNA wybutosine biosynthesis enzyme *(TYW2/TYW3)
Gene families : OG0063174 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr2.04989 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_122 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0000166 | nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003689 | DNA clamp loader activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003824 | catalytic activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003852 | 2-isopropylmalate synthase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003909 | DNA ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004055 | argininosuccinate synthase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005198 | structural molecule activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005575 | cellular_component | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005663 | DNA replication factor C complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0005976 | polysaccharide metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006082 | organic acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006096 | glycolytic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006260 | DNA replication | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006310 | DNA recombination | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006520 | amino acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006525 | arginine metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006526 | arginine biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006551 | leucine metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0008150 | biological_process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0008152 | metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008483 | transaminase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009058 | biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009098 | leucine biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009250 | glucan biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0009678 | diphosphate hydrolysis-driven proton transmembrane transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009966 | regulation of signal transduction | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009987 | cellular process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010646 | regulation of cell communication | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016758 | hexosyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0023051 | regulation of signaling | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030955 | potassium ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0031420 | alkali metal ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043248 | proteasome assembly | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044042 | glucan metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044237 | cellular metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044281 | small molecule metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0046527 | glucosyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0046912 | acyltransferase activity, acyl groups converted into alkyl on transfer | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0051169 | nuclear transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0051273 | beta-glucan metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0060090 | molecular adaptor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071704 | organic substance metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0098796 | membrane protein complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1902600 | proton transmembrane transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| No external refs found! |