Lsat_1_v5_gn_9_72921.1 (SRS, OVA7, ATSRS)

Aliases : SRS, OVA7, ATSRS

Description : serine-tRNA ligase

Gene families : OG0016383 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_72921.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_42

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr5.00270	SRS, OVA7, ATSRS	serine-tRNA ligase	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003747	translation release factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003879	ATP phosphoribosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004655	porphobilinogen synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006450	regulation of translational fidelity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006465	signal peptide processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006547	histidine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008184	glycogen phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043603	amide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015866	Ser-tRNA-synth_1_N	98	201
IPR002314	aa-tRNA-synt_IIb	316	507

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Lsat_1_v5_gn_9_72921.1 (SRS, OVA7, ATSRS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation