Bra030858 (Cpn60beta1, LEN1,...)

Aliases : Cpn60beta1, LEN1, CPNB1, CPN60B

Description : chaperone *(Hsp60). subunit beta of CPN60 assembly chaperone heterodimer. subunit beta of Cpn60 chaperonin complex

Gene families : OG0001443 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001443_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra030858
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_93

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_5_134540.1	CPNB2, Cpn60beta2	subunit beta of CPN60 assembly chaperone heterodimer....	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004655	porphobilinogen synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004784	superoxide dismutase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006144	purine nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006353	DNA-templated transcription termination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006801	superoxide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008150	biological_process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046112	nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	167	670

External Links

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Bra030858 (Cpn60beta1, LEN1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation