Spov3_chr4.04330 (AtCHC2, CHC2)

Aliases : AtCHC2, CHC2

Description : MAP3K-MEKK protein kinase. heavy chain of clathrin triskelion. EC_2.7 transferase transferring phosphorus-containing group

Gene families : OG0000457 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.04330
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
Bra001391	AtCHC1, CHC1, HAS1	heavy chain of clathrin triskelion	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra034864	AtCHC1, CHC1, HAS1	heavy chain of clathrin triskelion	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_12740.1	AtCHC1, CHC1, HAS1	heavy chain of clathrin triskelion	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
MF	GO:0005198	structural molecule activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005049	nuclear export signal receptor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006013	mannose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0120227	acyl-CoA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901567	fatty acid derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR022365	Clathrin_H-chain_propeller_rpt	433	469
IPR022365	Clathrin_H-chain_propeller_rpt	513	554
IPR015348	Clathrin_H-chain_linker_core	701	724
IPR000547	Clathrin_H-chain/VPS_repeat	1498	1637
IPR000547	Clathrin_H-chain/VPS_repeat	1348	1489
IPR000547	Clathrin_H-chain/VPS_repeat	927	1020
IPR000547	Clathrin_H-chain/VPS_repeat	1060	1189
IPR000547	Clathrin_H-chain/VPS_repeat	1202	1339
IPR000719	Prot_kinase_dom	13	263

External Links

No external refs found!

Spov3_chr4.04330 (AtCHC2, CHC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation