Coexpression cluster: Cluster_222 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 17.02% (8/47) 3.32 1e-06 5.6e-05
GO:0003676 nucleic acid binding 27.66% (13/47) 2.43 0.0 6e-05
GO:0016070 RNA metabolic process 14.89% (7/47) 3.69 1e-06 7.7e-05
GO:0006139 nucleobase-containing compound metabolic process 17.02% (8/47) 3.12 3e-06 0.000116
GO:0090304 nucleic acid metabolic process 14.89% (7/47) 3.27 7e-06 0.000144
GO:1901360 organic cyclic compound metabolic process 17.02% (8/47) 2.93 9e-06 0.000148
GO:0046483 heterocycle metabolic process 17.02% (8/47) 2.99 7e-06 0.00015
GO:0006725 cellular aromatic compound metabolic process 17.02% (8/47) 2.99 6e-06 0.000174
GO:0005488 binding 51.06% (24/47) 1.19 1.6e-05 0.000247
GO:0034641 cellular nitrogen compound metabolic process 17.02% (8/47) 2.47 8.4e-05 0.001157
GO:0097159 organic cyclic compound binding 34.04% (16/47) 1.3 0.000355 0.00408
GO:1901363 heterocyclic compound binding 34.04% (16/47) 1.3 0.000355 0.00408
GO:0000413 protein peptidyl-prolyl isomerization 4.26% (2/47) 5.89 0.000529 0.005215
GO:0018208 peptidyl-proline modification 4.26% (2/47) 5.89 0.000529 0.005215
GO:0016853 isomerase activity 6.38% (3/47) 3.98 0.000917 0.007912
GO:0005515 protein binding 21.28% (10/47) 1.68 0.000896 0.008239
GO:0032774 RNA biosynthetic process 6.38% (3/47) 3.91 0.001059 0.008594
GO:0006396 RNA processing 6.38% (3/47) 3.81 0.001295 0.009408
GO:0003674 molecular_function 59.57% (28/47) 0.69 0.001265 0.0097
GO:0009451 RNA modification 4.26% (2/47) 4.94 0.001963 0.013547
GO:0016859 cis-trans isomerase activity 4.26% (2/47) 4.84 0.002261 0.013566
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 4.26% (2/47) 4.84 0.002261 0.013566
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.26% (2/47) 4.89 0.00211 0.013864
GO:0018193 peptidyl-amino acid modification 4.26% (2/47) 4.79 0.002417 0.0139
GO:0034062 5'-3' RNA polymerase activity 4.26% (2/47) 4.72 0.002661 0.014124
GO:0097747 RNA polymerase activity 4.26% (2/47) 4.72 0.002661 0.014124
GO:0140098 catalytic activity, acting on RNA 6.38% (3/47) 3.37 0.003076 0.015722
GO:0030014 CCR4-NOT complex 2.13% (1/47) 8.11 0.003619 0.01665
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 2.13% (1/47) 8.11 0.003619 0.01665
GO:0005049 nuclear export signal receptor activity 2.13% (1/47) 8.11 0.003619 0.01665
GO:0034654 nucleobase-containing compound biosynthetic process 6.38% (3/47) 3.23 0.00406 0.018072
GO:0006807 nitrogen compound metabolic process 23.4% (11/47) 1.26 0.004718 0.020347
GO:0016423 tRNA (guanine) methyltransferase activity 2.13% (1/47) 7.37 0.006025 0.025197
GO:0019438 aromatic compound biosynthetic process 6.38% (3/47) 2.98 0.00655 0.026586
GO:0018130 heterocycle biosynthetic process 6.38% (3/47) 2.95 0.006957 0.027431
GO:0008175 tRNA methyltransferase activity 2.13% (1/47) 7.11 0.007226 0.0277
GO:0006351 DNA-templated transcription 4.26% (2/47) 3.91 0.00788 0.028615
GO:0043170 macromolecule metabolic process 21.28% (10/47) 1.25 0.00776 0.028943
GO:0140142 nucleocytoplasmic carrier activity 2.13% (1/47) 6.69 0.009623 0.033201
GO:1901362 organic cyclic compound biosynthetic process 6.38% (3/47) 2.79 0.009427 0.033357
GO:0140640 catalytic activity, acting on a nucleic acid 6.38% (3/47) 2.69 0.011219 0.036864
GO:0016779 nucleotidyltransferase activity 4.26% (2/47) 3.66 0.011014 0.03707
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_184 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_189 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_220 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_236 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_252 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_255 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_306 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_53 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_64 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_70 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_207 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_211 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_218 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_228 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_95 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_152 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_160 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (47) (download table)

InterPro Domains

GO Terms

Family Terms