Coexpression cluster: Cluster_13 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015979 photosynthesis 23.91% (22/92) 6.9 0.0 0.0
GO:0009521 photosystem 22.83% (21/92) 7.01 0.0 0.0
GO:0098796 membrane protein complex 25.0% (23/92) 5.0 0.0 0.0
GO:0032991 protein-containing complex 25.0% (23/92) 3.89 0.0 0.0
GO:0009522 photosystem I 9.78% (9/92) 7.65 0.0 0.0
GO:0044237 cellular metabolic process 39.13% (36/92) 2.13 0.0 0.0
GO:0009523 photosystem II 8.7% (8/92) 6.68 0.0 0.0
GO:0005575 cellular_component 35.87% (33/92) 2.19 0.0 0.0
GO:0009538 photosystem I reaction center 6.52% (6/92) 7.5 0.0 0.0
GO:0009987 cellular process 42.39% (39/92) 1.61 0.0 0.0
GO:0008152 metabolic process 40.22% (37/92) 1.6 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 5.43% (5/92) 6.8 0.0 0.0
GO:0009579 thylakoid 5.43% (5/92) 6.59 0.0 0.0
GO:0010109 regulation of photosynthesis 3.26% (3/92) 8.72 0.0 0.0
GO:0043467 regulation of generation of precursor metabolites and energy 3.26% (3/92) 8.72 0.0 0.0
GO:0042549 photosystem II stabilization 3.26% (3/92) 8.72 0.0 0.0
GO:0009539 photosystem II reaction center 3.26% (3/92) 8.72 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 3.26% (3/92) 8.72 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 6.52% (6/92) 5.31 0.0 0.0
GO:0046034 ATP metabolic process 6.52% (6/92) 5.31 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 6.52% (6/92) 5.31 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 6.52% (6/92) 5.31 0.0 0.0
GO:1990204 oxidoreductase complex 5.43% (5/92) 6.0 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 6.52% (6/92) 5.22 0.0 0.0
GO:0019684 photosynthesis, light reaction 5.43% (5/92) 5.88 0.0 0.0
GO:0009767 photosynthetic electron transport chain 5.43% (5/92) 5.84 0.0 0.0
GO:0016168 chlorophyll binding 4.35% (4/92) 6.64 0.0 0.0
GO:0110165 cellular anatomical entity 23.91% (22/92) 1.88 0.0 1e-06
GO:0009150 purine ribonucleotide metabolic process 6.52% (6/92) 4.65 0.0 1e-06
GO:0019693 ribose phosphate metabolic process 6.52% (6/92) 4.65 0.0 1e-06
GO:0009259 ribonucleotide metabolic process 6.52% (6/92) 4.65 0.0 1e-06
GO:0022900 electron transport chain 5.43% (5/92) 5.32 0.0 1e-06
GO:0006163 purine nucleotide metabolic process 6.52% (6/92) 4.48 0.0 2e-06
GO:0072521 purine-containing compound metabolic process 6.52% (6/92) 4.46 0.0 2e-06
GO:0043232 intracellular non-membrane-bounded organelle 9.78% (9/92) 3.21 1e-06 3e-06
GO:0043228 non-membrane-bounded organelle 9.78% (9/92) 3.21 1e-06 3e-06
GO:0009117 nucleotide metabolic process 6.52% (6/92) 4.29 1e-06 4e-06
GO:0006753 nucleoside phosphate metabolic process 6.52% (6/92) 4.24 1e-06 4e-06
GO:0008150 biological_process 44.57% (41/92) 1.03 1e-06 4e-06
GO:0055086 nucleobase-containing small molecule metabolic process 6.52% (6/92) 4.15 1e-06 6e-06
GO:1901135 carbohydrate derivative metabolic process 6.52% (6/92) 3.87 4e-06 1.7e-05
GO:0010242 oxygen evolving activity 2.17% (2/92) 8.72 6e-06 2.4e-05
GO:0043226 organelle 10.87% (10/92) 2.62 5e-06 2.4e-05
GO:0043229 intracellular organelle 10.87% (10/92) 2.62 5e-06 2.4e-05
GO:0019898 extrinsic component of membrane 3.26% (3/92) 6.4 6e-06 2.4e-05
GO:0006091 generation of precursor metabolites and energy 5.43% (5/92) 4.29 6e-06 2.5e-05
GO:0019637 organophosphate metabolic process 6.52% (6/92) 3.55 1.3e-05 5.2e-05
GO:1902600 proton transmembrane transport 4.35% (4/92) 4.48 3.3e-05 0.000129
GO:0016020 membrane 15.22% (14/92) 1.82 3.8e-05 0.000145
GO:0010207 photosystem II assembly 2.17% (2/92) 7.4 5.5e-05 0.000207
GO:1902494 catalytic complex 5.43% (5/92) 3.45 9.9e-05 0.000364
GO:0034641 cellular nitrogen compound metabolic process 11.96% (11/92) 1.96 0.000121 0.00043
GO:0034220 monoatomic ion transmembrane transport 4.35% (4/92) 3.98 0.000125 0.000436
GO:0098655 monoatomic cation transmembrane transport 4.35% (4/92) 4.0 0.000121 0.000437
GO:0098662 inorganic cation transmembrane transport 4.35% (4/92) 3.87 0.000171 0.000585
GO:0098660 inorganic ion transmembrane transport 4.35% (4/92) 3.79 0.000208 0.000697
GO:0006811 monoatomic ion transport 5.43% (5/92) 3.01 0.000414 0.001364
GO:1901566 organonitrogen compound biosynthetic process 7.61% (7/92) 2.31 0.000555 0.001799
GO:0044271 cellular nitrogen compound biosynthetic process 7.61% (7/92) 2.1 0.001296 0.00413
GO:0006812 monoatomic cation transport 4.35% (4/92) 3.07 0.001379 0.004322
GO:0044281 small molecule metabolic process 6.52% (6/92) 2.26 0.001632 0.005031
GO:0015995 chlorophyll biosynthetic process 1.09% (1/92) 8.72 0.002364 0.007056
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.09% (1/92) 8.72 0.002364 0.007056
GO:0006725 cellular aromatic compound metabolic process 7.61% (7/92) 1.83 0.003605 0.010591
GO:0046483 heterocycle metabolic process 7.61% (7/92) 1.83 0.003701 0.010704
GO:1901360 organic cyclic compound metabolic process 7.61% (7/92) 1.77 0.004537 0.012923
GO:0015986 proton motive force-driven ATP synthesis 2.17% (2/92) 4.14 0.005812 0.016308
GO:0009201 ribonucleoside triphosphate biosynthetic process 2.17% (2/92) 4.08 0.006292 0.01643
GO:0009142 nucleoside triphosphate biosynthetic process 2.17% (2/92) 4.08 0.006292 0.01643
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 2.17% (2/92) 4.08 0.006292 0.01643
GO:0006754 ATP biosynthetic process 2.17% (2/92) 4.08 0.006292 0.01643
GO:0009145 purine nucleoside triphosphate biosynthetic process 2.17% (2/92) 4.08 0.006292 0.01643
GO:0009507 chloroplast 1.09% (1/92) 7.14 0.007077 0.017739
GO:0015994 chlorophyll metabolic process 1.09% (1/92) 7.14 0.007077 0.017739
GO:0009536 plastid 1.09% (1/92) 7.14 0.007077 0.017739
GO:0044249 cellular biosynthetic process 7.61% (7/92) 1.64 0.007493 0.018536
GO:0006139 nucleobase-containing compound metabolic process 6.52% (6/92) 1.73 0.009576 0.02338
GO:0005840 ribosome 4.35% (4/92) 2.27 0.009765 0.023536
GO:0006412 translation 4.35% (4/92) 2.23 0.01074 0.025558
GO:0003735 structural constituent of ribosome 4.35% (4/92) 2.22 0.011044 0.025953
GO:0043043 peptide biosynthetic process 4.35% (4/92) 2.2 0.011353 0.026351
GO:0043604 amide biosynthetic process 4.35% (4/92) 2.19 0.011882 0.027241
GO:0009152 purine ribonucleotide biosynthetic process 2.17% (2/92) 3.55 0.012695 0.027753
GO:0009260 ribonucleotide biosynthetic process 2.17% (2/92) 3.55 0.012695 0.027753
GO:0046390 ribose phosphate biosynthetic process 2.17% (2/92) 3.55 0.012695 0.027753
GO:1901576 organic substance biosynthetic process 7.61% (7/92) 1.49 0.012504 0.028323
GO:0046906 tetrapyrrole binding 5.43% (5/92) 1.83 0.013437 0.029036
GO:0046148 pigment biosynthetic process 1.09% (1/92) 6.14 0.014104 0.030131
GO:0006518 peptide metabolic process 4.35% (4/92) 2.09 0.014638 0.030921
GO:0006164 purine nucleotide biosynthetic process 2.17% (2/92) 3.37 0.016246 0.033563
GO:0005509 calcium ion binding 3.26% (3/92) 2.5 0.016434 0.033583
GO:0072522 purine-containing compound biosynthetic process 2.17% (2/92) 3.35 0.016622 0.033601
GO:0043603 amide metabolic process 4.35% (4/92) 2.05 0.016156 0.033748
GO:0005198 structural molecule activity 4.35% (4/92) 2.02 0.017494 0.034619
GO:0065003 protein-containing complex assembly 2.17% (2/92) 3.31 0.017384 0.034769
GO:0009058 biosynthetic process 7.61% (7/92) 1.34 0.021285 0.039619
GO:0006779 porphyrin-containing compound biosynthetic process 1.09% (1/92) 5.55 0.021082 0.039634
GO:0015252 proton channel activity 1.09% (1/92) 5.55 0.021082 0.039634
GO:0016868 intramolecular transferase activity, phosphotransferases 1.09% (1/92) 5.55 0.021082 0.039634
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.09% (1/92) 5.55 0.021082 0.039634
GO:0005261 monoatomic cation channel activity 1.09% (1/92) 5.55 0.021082 0.039634
GO:1901293 nucleoside phosphate biosynthetic process 2.17% (2/92) 3.11 0.022692 0.041021
GO:0009165 nucleotide biosynthetic process 2.17% (2/92) 3.11 0.022692 0.041021
GO:0005216 monoatomic ion channel activity 2.17% (2/92) 3.12 0.022263 0.041034
GO:0043933 protein-containing complex organization 2.17% (2/92) 3.07 0.024001 0.042973
GO:0022607 cellular component assembly 2.17% (2/92) 3.04 0.02489 0.044145
GO:0042440 pigment metabolic process 1.09% (1/92) 5.26 0.025707 0.045167
GO:1901137 carbohydrate derivative biosynthetic process 2.17% (2/92) 2.96 0.027637 0.048109
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_48 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_123 0.041 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_160 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_221 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_17 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_38 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_53 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_56 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_62 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_70 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_101 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_136 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_158 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_198 0.042 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_222 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_147 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_157 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_234 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_658 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_40 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_104 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (92) (download table)

InterPro Domains

GO Terms

Family Terms