ID | Label | % in cluster | Enrichment log2 | p-value | Corrected p-value |
---|---|---|---|---|---|
GO:0003677 | DNA binding | 34.69% (17/49) | 3.22 | 0.0 | 0.0 |
GO:0006260 | DNA replication | 12.24% (6/49) | 7.2 | 0.0 | 0.0 |
GO:0006259 | DNA metabolic process | 14.29% (7/49) | 5.27 | 0.0 | 0.0 |
GO:0003676 | nucleic acid binding | 34.69% (17/49) | 2.41 | 0.0 | 0.0 |
GO:0090304 | nucleic acid metabolic process | 18.37% (9/49) | 3.48 | 0.0 | 2e-06 |
GO:0006139 | nucleobase-containing compound metabolic process | 18.37% (9/49) | 3.21 | 0.0 | 1e-05 |
GO:0006725 | cellular aromatic compound metabolic process | 18.37% (9/49) | 3.06 | 1e-06 | 1.7e-05 |
GO:1901360 | organic cyclic compound metabolic process | 18.37% (9/49) | 3.03 | 1e-06 | 1.8e-05 |
GO:0046483 | heterocycle metabolic process | 18.37% (9/49) | 3.06 | 1e-06 | 1.9e-05 |
GO:0097159 | organic cyclic compound binding | 40.82% (20/49) | 1.49 | 7e-06 | 7.1e-05 |
GO:1901363 | heterocyclic compound binding | 40.82% (20/49) | 1.49 | 7e-06 | 7.1e-05 |
GO:0005488 | binding | 55.1% (27/49) | 1.14 | 6e-06 | 7.8e-05 |
GO:0006269 | DNA replication, synthesis of RNA primer | 4.08% (2/49) | 8.71 | 8e-06 | 8e-05 |
GO:0003682 | chromatin binding | 6.12% (3/49) | 6.2 | 9e-06 | 8.3e-05 |
GO:0051276 | chromosome organization | 6.12% (3/49) | 5.83 | 2.1e-05 | 0.000171 |
GO:0034641 | cellular nitrogen compound metabolic process | 18.37% (9/49) | 2.46 | 3e-05 | 0.000236 |
GO:0044877 | protein-containing complex binding | 6.12% (3/49) | 5.38 | 5.3e-05 | 0.000384 |
GO:0032508 | DNA duplex unwinding | 4.08% (2/49) | 7.12 | 9.2e-05 | 0.000601 |
GO:0032392 | DNA geometric change | 4.08% (2/49) | 7.12 | 9.2e-05 | 0.000601 |
GO:0006996 | organelle organization | 6.12% (3/49) | 4.6 | 0.000263 | 0.001628 |
GO:0071103 | DNA conformation change | 4.08% (2/49) | 5.9 | 0.000521 | 0.003076 |
GO:0042575 | DNA polymerase complex | 2.04% (1/49) | 9.71 | 0.001198 | 0.006458 |
GO:0043625 | delta DNA polymerase complex | 2.04% (1/49) | 9.71 | 0.001198 | 0.006458 |
GO:0016043 | cellular component organization | 8.16% (4/49) | 3.04 | 0.001437 | 0.007424 |
GO:0071840 | cellular component organization or biogenesis | 8.16% (4/49) | 2.91 | 0.001957 | 0.009705 |
GO:0003896 | DNA primase activity | 2.04% (1/49) | 8.71 | 0.002394 | 0.010996 |
GO:0031390 | Ctf18 RFC-like complex | 2.04% (1/49) | 8.71 | 0.002394 | 0.010996 |
GO:0007062 | sister chromatid cohesion | 2.04% (1/49) | 8.12 | 0.003589 | 0.013909 |
GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | 2.04% (1/49) | 8.12 | 0.003589 | 0.013909 |
GO:0061731 | ribonucleoside-diphosphate reductase activity | 2.04% (1/49) | 8.12 | 0.003589 | 0.013909 |
GO:0007064 | mitotic sister chromatid cohesion | 2.04% (1/49) | 8.12 | 0.003589 | 0.013909 |
GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 2.04% (1/49) | 8.12 | 0.003589 | 0.013909 |
GO:0006270 | DNA replication initiation | 2.04% (1/49) | 7.71 | 0.004783 | 0.017445 |
GO:0031491 | nucleosome binding | 2.04% (1/49) | 7.71 | 0.004783 | 0.017445 |
GO:0000808 | origin recognition complex | 2.04% (1/49) | 7.38 | 0.005975 | 0.02117 |
GO:0005634 | nucleus | 6.12% (3/49) | 2.95 | 0.006931 | 0.023872 |
GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | 2.04% (1/49) | 7.12 | 0.007166 | 0.024017 |
GO:0140097 | catalytic activity, acting on DNA | 4.08% (2/49) | 3.86 | 0.008453 | 0.027584 |
GO:0009987 | cellular process | 28.57% (14/49) | 0.96 | 0.009228 | 0.029339 |
GO:0140513 | nuclear protein-containing complex | 4.08% (2/49) | 3.72 | 0.010224 | 0.030923 |
GO:0016779 | nucleotidyltransferase activity | 4.08% (2/49) | 3.73 | 0.010071 | 0.03122 |
GO:0043231 | intracellular membrane-bounded organelle | 6.12% (3/49) | 2.67 | 0.011777 | 0.032454 |
GO:0043227 | membrane-bounded organelle | 6.12% (3/49) | 2.67 | 0.011777 | 0.032454 |
GO:0043170 | macromolecule metabolic process | 20.41% (10/49) | 1.17 | 0.011215 | 0.033112 |
GO:0044237 | cellular metabolic process | 20.41% (10/49) | 1.17 | 0.011645 | 0.03358 |
GO:0003887 | DNA-directed DNA polymerase activity | 2.04% (1/49) | 6.12 | 0.014282 | 0.0385 |
GO:0034061 | DNA polymerase activity | 2.04% (1/49) | 5.9 | 0.016643 | 0.042995 |
GO:0003674 | molecular_function | 57.14% (28/49) | 0.48 | 0.016338 | 0.043105 |
GO:0140640 | catalytic activity, acting on a nucleic acid | 6.12% (3/49) | 2.44 | 0.018069 | 0.045727 |
GO:0006807 | nitrogen compound metabolic process | 20.41% (10/49) | 1.05 | 0.019172 | 0.047546 |
Clade | % in cluster | Enrichment log2 | p-value | Corrected p-value | Gene Family Method |
---|---|---|---|---|---|
No enriched Clades found |
Species | Clustering Method | Target | Jaccard index | Gene Family Method (for comparison) | Actions |
---|---|---|---|---|---|
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_2 | 0.045 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_27 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_35 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_76 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_87 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_128 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_170 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_173 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_191 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_201 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_222 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Brassica rapa | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) | Cluster_299 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_34 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_35 | 0.008 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_50 | 0.023 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_66 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_135 | 0.007 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_185 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Lactuca sativa | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) | Cluster_222 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_77 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Spinacia oleracea | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) | Cluster_150 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_31 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_102 | 0.009 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_154 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_160 | 0.011 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |
Marchantia polymorpha | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) | Cluster_162 | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | Compare |