Coexpression cluster: Cluster_189 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003677 DNA binding 34.69% (17/49) 3.22 0.0 0.0
GO:0006260 DNA replication 12.24% (6/49) 7.2 0.0 0.0
GO:0006259 DNA metabolic process 14.29% (7/49) 5.27 0.0 0.0
GO:0003676 nucleic acid binding 34.69% (17/49) 2.41 0.0 0.0
GO:0090304 nucleic acid metabolic process 18.37% (9/49) 3.48 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 18.37% (9/49) 3.21 0.0 1e-05
GO:0006725 cellular aromatic compound metabolic process 18.37% (9/49) 3.06 1e-06 1.7e-05
GO:1901360 organic cyclic compound metabolic process 18.37% (9/49) 3.03 1e-06 1.8e-05
GO:0046483 heterocycle metabolic process 18.37% (9/49) 3.06 1e-06 1.9e-05
GO:0097159 organic cyclic compound binding 40.82% (20/49) 1.49 7e-06 7.1e-05
GO:1901363 heterocyclic compound binding 40.82% (20/49) 1.49 7e-06 7.1e-05
GO:0005488 binding 55.1% (27/49) 1.14 6e-06 7.8e-05
GO:0006269 DNA replication, synthesis of RNA primer 4.08% (2/49) 8.71 8e-06 8e-05
GO:0003682 chromatin binding 6.12% (3/49) 6.2 9e-06 8.3e-05
GO:0051276 chromosome organization 6.12% (3/49) 5.83 2.1e-05 0.000171
GO:0034641 cellular nitrogen compound metabolic process 18.37% (9/49) 2.46 3e-05 0.000236
GO:0044877 protein-containing complex binding 6.12% (3/49) 5.38 5.3e-05 0.000384
GO:0032508 DNA duplex unwinding 4.08% (2/49) 7.12 9.2e-05 0.000601
GO:0032392 DNA geometric change 4.08% (2/49) 7.12 9.2e-05 0.000601
GO:0006996 organelle organization 6.12% (3/49) 4.6 0.000263 0.001628
GO:0071103 DNA conformation change 4.08% (2/49) 5.9 0.000521 0.003076
GO:0042575 DNA polymerase complex 2.04% (1/49) 9.71 0.001198 0.006458
GO:0043625 delta DNA polymerase complex 2.04% (1/49) 9.71 0.001198 0.006458
GO:0016043 cellular component organization 8.16% (4/49) 3.04 0.001437 0.007424
GO:0071840 cellular component organization or biogenesis 8.16% (4/49) 2.91 0.001957 0.009705
GO:0003896 DNA primase activity 2.04% (1/49) 8.71 0.002394 0.010996
GO:0031390 Ctf18 RFC-like complex 2.04% (1/49) 8.71 0.002394 0.010996
GO:0007062 sister chromatid cohesion 2.04% (1/49) 8.12 0.003589 0.013909
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 2.04% (1/49) 8.12 0.003589 0.013909
GO:0061731 ribonucleoside-diphosphate reductase activity 2.04% (1/49) 8.12 0.003589 0.013909
GO:0007064 mitotic sister chromatid cohesion 2.04% (1/49) 8.12 0.003589 0.013909
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 2.04% (1/49) 8.12 0.003589 0.013909
GO:0006270 DNA replication initiation 2.04% (1/49) 7.71 0.004783 0.017445
GO:0031491 nucleosome binding 2.04% (1/49) 7.71 0.004783 0.017445
GO:0000808 origin recognition complex 2.04% (1/49) 7.38 0.005975 0.02117
GO:0005634 nucleus 6.12% (3/49) 2.95 0.006931 0.023872
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 2.04% (1/49) 7.12 0.007166 0.024017
GO:0140097 catalytic activity, acting on DNA 4.08% (2/49) 3.86 0.008453 0.027584
GO:0009987 cellular process 28.57% (14/49) 0.96 0.009228 0.029339
GO:0140513 nuclear protein-containing complex 4.08% (2/49) 3.72 0.010224 0.030923
GO:0016779 nucleotidyltransferase activity 4.08% (2/49) 3.73 0.010071 0.03122
GO:0043231 intracellular membrane-bounded organelle 6.12% (3/49) 2.67 0.011777 0.032454
GO:0043227 membrane-bounded organelle 6.12% (3/49) 2.67 0.011777 0.032454
GO:0043170 macromolecule metabolic process 20.41% (10/49) 1.17 0.011215 0.033112
GO:0044237 cellular metabolic process 20.41% (10/49) 1.17 0.011645 0.03358
GO:0003887 DNA-directed DNA polymerase activity 2.04% (1/49) 6.12 0.014282 0.0385
GO:0034061 DNA polymerase activity 2.04% (1/49) 5.9 0.016643 0.042995
GO:0003674 molecular_function 57.14% (28/49) 0.48 0.016338 0.043105
GO:0140640 catalytic activity, acting on a nucleic acid 6.12% (3/49) 2.44 0.018069 0.045727
GO:0006807 nitrogen compound metabolic process 20.41% (10/49) 1.05 0.019172 0.047546
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_2 0.045 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_76 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_173 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_222 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_299 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_35 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.023 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_66 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_135 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_185 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_222 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_31 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_102 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_154 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_160 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_162 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (49) (download table)

InterPro Domains

GO Terms

Family Terms