Coexpression cluster: Cluster_147 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009521 photosystem 27.08% (13/48) 7.88 0.0 0.0
GO:0015979 photosynthesis 25.0% (12/48) 7.63 0.0 0.0
GO:0098796 membrane protein complex 29.17% (14/48) 6.3 0.0 0.0
GO:0009522 photosystem I 14.58% (7/48) 8.99 0.0 0.0
GO:0032991 protein-containing complex 29.17% (14/48) 4.81 0.0 0.0
GO:0009523 photosystem II 12.5% (6/48) 7.57 0.0 0.0
GO:0009538 photosystem I reaction center 8.33% (4/48) 9.5 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 10.42% (5/48) 7.74 0.0 0.0
GO:1990204 oxidoreductase complex 10.42% (5/48) 7.5 0.0 0.0
GO:0019898 extrinsic component of membrane 8.33% (4/48) 7.7 0.0 0.0
GO:0005575 cellular_component 29.17% (14/48) 2.39 0.0 3e-06
GO:0008152 metabolic process 37.5% (18/48) 1.91 0.0 5e-06
GO:1902494 catalytic complex 10.42% (5/48) 4.94 1e-06 8e-06
GO:0044237 cellular metabolic process 29.17% (14/48) 2.18 1e-06 1.4e-05
GO:0009987 cellular process 33.33% (16/48) 1.78 7e-06 7.1e-05
GO:0010207 photosystem II assembly 4.17% (2/48) 8.5 1.1e-05 0.000112
GO:0008150 biological_process 41.67% (20/48) 1.43 1.2e-05 0.000116
GO:0005509 calcium ion binding 8.33% (4/48) 4.5 3e-05 0.000268
GO:0010242 oxygen evolving activity 2.08% (1/48) 9.5 0.001376 0.008919
GO:0042549 photosystem II stabilization 2.08% (1/48) 9.5 0.001376 0.008919
GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity 2.08% (1/48) 9.5 0.001376 0.008919
GO:0043467 regulation of generation of precursor metabolites and energy 2.08% (1/48) 9.5 0.001376 0.008919
GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity 2.08% (1/48) 9.5 0.001376 0.008919
GO:0042548 regulation of photosynthesis, light reaction 2.08% (1/48) 9.5 0.001376 0.008919
GO:0010109 regulation of photosynthesis 2.08% (1/48) 9.5 0.001376 0.008919
GO:0009507 chloroplast 2.08% (1/48) 8.5 0.002751 0.013504
GO:0016851 magnesium chelatase activity 2.08% (1/48) 8.5 0.002751 0.013504
GO:0051002 ligase activity, forming nitrogen-metal bonds 2.08% (1/48) 8.5 0.002751 0.013504
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 2.08% (1/48) 8.5 0.002751 0.013504
GO:0009536 plastid 2.08% (1/48) 8.5 0.002751 0.013504
GO:0030091 protein repair 2.08% (1/48) 8.5 0.002751 0.013504
GO:0010206 photosystem II repair 2.08% (1/48) 8.5 0.002751 0.013504
GO:0065003 protein-containing complex assembly 4.17% (2/48) 4.83 0.002265 0.014115
GO:0022607 cellular component assembly 4.17% (2/48) 4.5 0.003542 0.016392
GO:0043933 protein-containing complex organization 4.17% (2/48) 4.5 0.003542 0.016392
GO:0110165 cellular anatomical entity 14.58% (7/48) 1.63 0.006801 0.030605
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 2.08% (1/48) 6.7 0.009596 0.037011
GO:0016114 terpenoid biosynthetic process 2.08% (1/48) 6.7 0.009596 0.037011
GO:0015252 proton channel activity 2.08% (1/48) 6.7 0.009596 0.037011
GO:0005261 monoatomic cation channel activity 2.08% (1/48) 6.7 0.009596 0.037011
GO:0006721 terpenoid metabolic process 2.08% (1/48) 6.7 0.009596 0.037011
GO:0016874 ligase activity 4.17% (2/48) 3.8 0.009086 0.039781
GO:0016849 phosphorus-oxygen lyase activity 2.08% (1/48) 6.34 0.01232 0.046417
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_123 0.039 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_181 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_146 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_148 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_103 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_167 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_173 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_104 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (48) (download table)

InterPro Domains

GO Terms

Family Terms