Coexpression cluster: Cluster_123 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015979 photosynthesis 28.89% (13/45) 7.44 0.0 0.0
GO:0009521 photosystem 28.89% (13/45) 7.46 0.0 0.0
GO:0098796 membrane protein complex 37.78% (17/45) 5.79 0.0 0.0
GO:0009522 photosystem I 22.22% (10/45) 8.63 0.0 0.0
GO:0032991 protein-containing complex 37.78% (17/45) 4.37 0.0 0.0
GO:0009538 photosystem I reaction center 13.33% (6/45) 8.83 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 13.33% (6/45) 7.33 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 8.89% (4/45) 9.51 0.0 0.0
GO:0043467 regulation of generation of precursor metabolites and energy 8.89% (4/45) 9.51 0.0 0.0
GO:0042549 photosystem II stabilization 8.89% (4/45) 9.51 0.0 0.0
GO:0010109 regulation of photosynthesis 8.89% (4/45) 9.51 0.0 0.0
GO:0010242 oxygen evolving activity 8.89% (4/45) 9.51 0.0 0.0
GO:1990204 oxidoreductase complex 13.33% (6/45) 6.99 0.0 0.0
GO:0010207 photosystem II assembly 8.89% (4/45) 8.66 0.0 0.0
GO:0005575 cellular_component 37.78% (17/45) 2.03 0.0 2e-06
GO:1902494 catalytic complex 13.33% (6/45) 4.48 0.0 2e-06
GO:0044237 cellular metabolic process 35.56% (16/45) 1.97 1e-06 8e-06
GO:0009987 cellular process 44.44% (20/45) 1.6 2e-06 1.2e-05
GO:0065003 protein-containing complex assembly 8.89% (4/45) 5.23 4e-06 2.7e-05
GO:0043933 protein-containing complex organization 8.89% (4/45) 4.93 9e-06 5.8e-05
GO:0022607 cellular component assembly 8.89% (4/45) 4.9 1e-05 6.1e-05
GO:0009523 photosystem II 6.67% (3/45) 6.02 1.4e-05 7.9e-05
GO:0008152 metabolic process 35.56% (16/45) 1.37 0.000195 0.00107
GO:0019898 extrinsic component of membrane 4.44% (2/45) 6.24 0.000322 0.001688
GO:0008150 biological_process 46.67% (21/45) 0.96 0.000756 0.003812
GO:0016043 cellular component organization 8.89% (4/45) 3.16 0.001043 0.005052
GO:0071840 cellular component organization or biogenesis 8.89% (4/45) 3.04 0.001424 0.006643
GO:0016491 oxidoreductase activity 13.33% (6/45) 1.98 0.003939 0.017725
GO:0010277 chlorophyllide a oxygenase [overall] activity 2.22% (1/45) 7.83 0.004393 0.019088
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 2.22% (1/45) 7.51 0.005489 0.023053
GO:0009507 chloroplast 2.22% (1/45) 6.66 0.009858 0.038818
GO:0009536 plastid 2.22% (1/45) 6.66 0.009858 0.038818
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_111 0.029 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_142 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_167 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_169 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_187 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_192 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_208 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_212 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_221 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_237 0.084 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_253 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.041 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_147 0.039 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_104 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (45) (download table)

InterPro Domains

GO Terms

Family Terms