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  5. Bra009900

Bra009900 (AtRH3, RH3, emb1138)


Aliases : AtRH3, RH3, emb1138

Description : group-II intron splicing RNA helicase *(RH3)


Gene families : OG0007099 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra009900
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_130


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003747 translation release factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004146 dihydrofolate reductase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004455 ketol-acid reductoisomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004817 cysteine-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004827 proline-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004832 valine-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006433 prolyl-tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006438 valyl-tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006575 cellular modified amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006760 folic acid-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008079 translation termination factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009081 branched-chain amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016881 acid-amino acid ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035596 methylthiotransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0042803 protein homodimerization activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046653 tetrahydrofolate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0050497 alkylthioltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051087 protein-folding chaperone binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0060590 ATPase regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012562 GUCT 528 628
IPR001650 Helicase_C 333 441
IPR001878 Znf_CCHC 728 743
IPR011545 DEAD/DEAH_box_helicase_dom 122 296
No external refs found!