Lsat_1_v5_gn_6_40560.1 (HIRA)

Aliases : HIRA

Description : component *(HIRA) of HIRA chaperone complex

Gene families : OG0013404 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_40560.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra019432	HIRA	component *(HIRA) of HIRA chaperone complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003689	DNA clamp loader activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005663	DNA replication factor C complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030014	CCR4-NOT complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001680	WD40_rpt	121	155
IPR001680	WD40_rpt	60	94
IPR001680	WD40_rpt	336	363
IPR001680	WD40_rpt	161	196
IPR001680	WD40_rpt	13	41
IPR011494	HIRA-like_C	687	883

External Links

No external refs found!

Lsat_1_v5_gn_6_40560.1 (HIRA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation