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  5. Lsat_1_v5_gn_5_96021.1

Lsat_1_v5_gn_5_96021.1 (EMB3142, EDS4)


Aliases : EMB3142, EDS4

Description : scaffold nucleoporin of nuclear pore complex *(NUP205)


Gene families : OG0003336 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_96021.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr5.02237 EMB3142, EDS4 scaffold nucleoporin of nuclear pore complex *(NUP205) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003674 molecular_function IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003689 DNA clamp loader activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004797 thymidine kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004819 glutamine-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004832 valine-tRNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005049 nuclear export signal receptor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005663 DNA replication factor C complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006177 GMP biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006438 valyl-tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019136 deoxynucleoside kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019206 nucleoside kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030126 COPI vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030515 snoRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032535 regulation of cellular component size IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032956 regulation of actin cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032970 regulation of actin filament-based process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046037 GMP metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051493 regulation of cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051641 cellular localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071702 organic substance transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090066 regulation of anatomical structure size IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0110053 regulation of actin filament organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140299 small molecule sensor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140612 DNA damage sensor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1902903 regulation of supramolecular fiber organization IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 1212 1581
IPR021827 Nup186/Nup192/Nup205 27 1135
No external refs found!