- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LSM4, emb1644
Description : component *(LSm4) of U6-associated LSm accessory ribonucleoprotein complex
Gene families : OG0004655 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004655_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra036615 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_211 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004175 | endopeptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006284 | base-excision repair | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006401 | RNA catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006402 | mRNA catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006473 | protein acetylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006474 | N-terminal protein amino acid acetylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006595 | polyamine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006596 | polyamine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006597 | spermine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006606 | protein import into nucleus | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006886 | intracellular protein transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008104 | protein localization | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008150 | biological_process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008215 | spermine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008216 | spermidine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008233 | peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008237 | metallopeptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008295 | spermidine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008312 | 7S RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009309 | amine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0010181 | FMN binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010468 | regulation of gene expression | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0015031 | protein transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017069 | snRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017070 | U6 snRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0017196 | N-terminal peptidyl-methionine acetylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018206 | peptidyl-methionine modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019222 | regulation of metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0030117 | membrane coat | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0030120 | vesicle coat | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0030127 | COPII vesicle coat | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0030623 | U5 snRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0031248 | protein acetyltransferase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0031414 | N-terminal protein acetyltransferase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0031417 | NatC complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0033036 | macromolecule localization | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0033365 | protein localization to organelle | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034504 | protein localization to nucleus | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0042393 | histone binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0042401 | biogenic amine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043543 | protein acylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044093 | positive regulation of molecular function | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0045184 | establishment of protein localization | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0048500 | signal recognition particle | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0050789 | regulation of biological process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0050794 | regulation of cellular process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051170 | import into nucleus | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051641 | cellular localization | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0065007 | biological regulation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0071702 | organic substance transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0071705 | nitrogen compound transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0098796 | membrane protein complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0110154 | RNA decapping | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0110156 | methylguanosine-cap decapping | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:1902493 | acetyltransferase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | Sm_dom_euk/arc | 6 | 70 |
| No external refs found! |