Bra035439 (XW6)

Aliases : XW6

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome

Gene families : OG0004113 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004113_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra035439
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004055	argininosuccinate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006525	arginine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006526	arginine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013810	Ribosomal_uS5_N	91	155
IPR005324	Ribosomal_uS5_C	175	247

External Links

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Bra035439 (XW6)

Expression Profile

Co-expression Networks

Functional Annotation