Bra030925 (NRPB12, NRPD12, NRPE12)


Aliases : NRPB12, NRPD12, NRPE12

Description : component *(NRP-ABCDE12) of RNA polymerase complexes


Gene families : OG0003878 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003878_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra030925
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_210


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004664 prephenate dehydratase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006558 L-phenylalanine metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008652 amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009072 aromatic amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009094 L-phenylalanine biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016835 carbon-oxygen lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016836 hydro-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Brassica rapa GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901605 alpha-amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901607 alpha-amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006591 RNAP_P/RPABC4 10 41
No external refs found!